Arvicanthis niloticus (African grass rat): 117719140
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Entry
117719140 CDS
T08817
Symbol
Smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03082
ATP-dependent chromatin remodeling
anu04714
Thermogenesis
anu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117719140 (Smarcd1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
117719140 (Smarcd1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
117719140 (Smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117719140 (Smarcd1)
03036 Chromosome and associated proteins [BR:
anu03036
]
117719140 (Smarcd1)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117719140 (Smarcd1)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117719140 (Smarcd1)
PBAF complex
117719140 (Smarcd1)
GBAF(ncBAF) complex
117719140 (Smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
DivIC
Motif
Other DBs
NCBI-GeneID:
117719140
NCBI-ProteinID:
XP_034373146
LinkDB
All DBs
Position
13:73939546..73950687
Genome browser
AA seq
515 aa
AA seq
DB search
MAARAGFQSVAPSGGAGASGGAGVAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgggcgggtttccagtctgtggctccgagcggcggcgcgggagcctcagga
ggagcgggcgtggcggctgctctgggcccgggcggaactcccgggcctcccgtgcgaatg
ggcccggcgccgggtcaagggctgtaccgctctccgatgcccggggcggcctatccgaga
ccaggtatgttgccaggtagccgaatgacacctcagggaccttccatgggacctcctggc
tatggggggaacccttcagtccgacctggcctggcccagtcagggatggaccagtcccgc
aagagacctgcgcctcaacagatccagcaggtccagcagcaggcggtccaaaatcgaaat
cacaatgcaaagaaaaagaagatggctgataaaatcctacctcagaggattcgggaattg
gtaccagaatcacaggcctacatggatctcctggcttttgaaaggaaactggaccagact
attatgaggaaacgactagatatccaggaggccttgaaacgtcccatcaagcaaaaacgg
aagctgcgaatttttatttctaacacgttcaatccagccaagtcggatgccgaggatggg
gaagggacggtggcttcctgggagctccgggtagaaggccggctcctggaggactcagcc
ttgtccaaatatgatgccaccaagcaaaagagaaagttttcttccttttttaagtccttg
gtgattgaactggacaaagacctctatggaccagacaaccatctggtagaatggcacagg
accgccactacccaggagaccgatggcttccaggtgaagcgacccggagatgtgaatgtg
cggtgtacggtcctgctgatgctggattaccagcccccccagtttaaattagaccctcga
ctggctcggctcttgggcatccatacccagacacgtccagtgatcatccaagcactgtgg
caatatattaaaacacataagctccaggaccctcacgagcgagagtttgttatctgtgac
aagtacctccagcagatctttgaatctcagcggatgaagttctccgagatccctcagcgg
ctccatgccttgcttatgccaccagagcccatcatcattaatcacgtcatcagtgttgat
ccaaatgatcagaaaaagacagcatgctatgatattgacgtggaagtggatgacactttg
aagacccagatgaactctttcctgctgtccactgccagccagcaggagatcgctacgcta
gacaacaagatccatgagacaatagaaactatcaaccagctgaagacccagcgagagttc
atgttgagctttgcccgagaccctcagggtttcatcaatgattggcttcagtcccagtgc
cgggacctcaagacgatgactgatgtggtgggtaacccagaagaggagcgccgtgccgag
ttctacttccagccctgggctcaggaggctgtgtgccgatacttctactccaaggtgcag
cagaggcggcaggagttagagcaagccctgggaatccgaaacacatag
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