Arvicanthis niloticus (African grass rat): 117719577
Help
Entry
117719577 CDS
T08817
Symbol
Wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117719577 (Wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117719577 (Wdr33)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117719577 (Wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
eIF2A
WD40_RFWD3
Beta-prop_SCAP
Collagen
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
117719577
NCBI-ProteinID:
XP_034373640
LinkDB
All DBs
Position
14:complement(55436397..55534712)
Genome browser
AA seq
1342 aa
AA seq
DB search
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQADQIQPPPSSGTPLLGPQPFSGQGPISQIPQG
FQQPHPSQQMPLVAQMGPPGPQGQFRAPGPQGQMGPQGPPMHQGGGGPQGFMGPQGPQGP
PQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQG
PPAPQGHMGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPASQGMQGPLMGLNPRGMQG
PPGPRENQGPAPQGMMIGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPPQGSML
GPPQELRGPSGSQGQQGPPQGSMGPPPQGGMQGPPGPQGQQNSARGPHPSQGPIPFQQQK
APLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPHKGTKGRRERHA
SGLPSPPGLVATTTTSPFVVVTLGALPTTTWVPCQRGGMSRALDLSMVLTGGLSGVARTA
GVLLTGVVLTLISLMTSDQMTFILTSVLATGYGNLRDEEDPYHKKRSGGEGALDPPFHLI
TGNSMRGMAGVQPEALQGHGKAVDLEMNASPGILMTHDFEGAGKKAFDEGLPQDTKAVLL
QEEGTTFLVLMTLVQKKFLMLLMTQPEDEISEVEAVAPLEGDPGSAYSPLLMSFLALKED
GSQTPGMETESPDQVMNTFVMLPVLIIPLTMATHQLAESVPLLSKAWTWPPYHPGSAPGM
MARALLNTERWRPKEAPRRTEEAKAEVAQDLPRECQNLGVPALWMETIMMDTTETNLLVA
LQAAVHLLEGAGVAVTGVEGVT
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggctacagaaattggctctcctccacgatttttccatatgccgaggtttcaacaccag
gctccccgacaattattttataagcgacctgattttgcacagcaacaagcaatgcagcaa
ctcacctttgatggaaaacgaatgagaaaagctgtgaaccgaaaaaccatagactataat
ccttctgtaattaagtatttggagaataggatatggcaaagagatcagagagatatgcgg
gcaattcagccggatgcaggttattataatgatctggtcccacctataggaatgttgaat
aaccctatgaatgcagtaacaacaaaatttgttaggacatcaacaaacaaagtaaaatgc
ccagtatttgttgtgaggtggaccccggaaggaagacggttggtcactggagcttctagt
ggggagttcaccttgtggaatgggctgactttcaactttgaaaccatattgcaggctcat
gatagccctgtgagggccatgacttggtcacataatgacatgtggatgttgacagcagat
catggaggatatgtgaaatattggcaatccaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggattttcttcgttgccatgaggaaagaattctc
cgaggtcatggtgctgatgtgaagtgtgtagactggcatccaaccaaagggttagtcgtt
tcaggaagtaaagatagccagcagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcatgcccataaaaacacagtgatggaagtgaaattaaacctcaatggc
aactggctcctcacagcgtcccgggaccacctttgtaagctttttgatatccgaaacctg
aaagaagagcttcaagtattccgaggtcacaagaaggaagctacagcggtagcctggcat
cctgttcatgaaggactttttgccagtggaggatctgatggctcgttgttgttctggcat
gttggggtagagaaggaggtaggtgggatggaaatggcccacgaagggatgatctggagt
ttggcttggcatcctctgggacatattctctgctcaggctcaaatgaccataccagcaaa
ttctggactcgaaaccggccaggtgataaaatgcgagaccgatacaacctgaacctcttg
cctggcatgtcagaagacggagtagagtatgatgacctggaacctaatagcctggcagtg
atcccagggatgggaataccagagcagctgaagttggccatggagcaggagcagatgggg
aaagatgaatcaaatgaaattgaaatgacaattccaggcttggattggggaatggaggaa
gtaatgcaaaaggatcagaaaaaagttcctcagaagaaagtcccttatgcaaagcccatt
cctgctcagttccaacaggcctggatgcaaaataaagttccaattcctgctccaaatgag
gtgctgaatgacaggaaagaggatattaagttagaagagaagaaaaaaacacaagcagaa
attgagcaagaaatggccacattgcagtacaccaaccctcagcttttagagcaacttaaa
attgaaaggcttgcacagaagcaggctgatcagatccagccccctccctcatctggtacc
cctctcctcggacctcagcccttttctggtcaaggtccaatatctcagattcctcaaggt
tttcagcagcctcatccatctcagcagatgcccttggtggctcaaatgggacctccaggt
ccgcagggccagttcagagcccctggacctcagggacaaatgggaccacaaggccctcca
atgcatcaaggaggtggggggccacaaggattcatgggaccacaaggaccccagggccct
ccccagggactgccacggcctcaggacatgcatggtccacaaggaatgcagaggcaccct
ggacctcatggccctttgggtccccaagggccccctggacctcaaggtagttctggtcct
caaggtcatatgggtcctcagggtccaccaggacctcagggtcacattggcccccaaggc
ccacctgctcctcagggccacatgggcccacagggtcctcctggtactcaaggaatgcag
gggccacctggtcccagaggaatgcaaggaccgcctcatcctcatgggatacagggtggg
ccagcgtctcaagggatgcagggacctctgatgggactgaatccaagaggaatgcagggg
cctccaggacctcgggagaatcagggtcctgctcctcaagggatgatgattggccaccca
cctcaagagatgagaggaccacaccctccaagtggattgctgggacatggccctcaggaa
atgagaggtcctcaggagatgcggggcatgcaggggcctccaccacaggggtcaatgttg
ggccctccccaggaacttcgaggaccctcaggttcacaagggcagcaagggccaccccag
ggctctatgggacctccaccccagggtggcatgcaaggacctcctggacctcagggacaa
cagaactcggcaagagggccacatccatctcaagggccaataccattccagcaacagaaa
gcacctctgctaggtgatgggccccgggcccccttcaatcaggaaggacagagtacaggt
cccccacccttgataccaggcctagggcaacagggagcacaaggccgcatccctcctctg
aaccctggacaaggacctggccctcacaaagggaccaaagggagaagggagagacatgca
agtggcctaccatcccctcctggattagttgccaccaccaccacatcaccgtttgtagtg
gtgactctcggggccctcccaaccaccacctgggtcccatgtcagagaggcggcatgagc
agagcgctggacctgagcatggtcctgacagggggcctttccggggtggccaggactgca
ggggtcctcctgacaggcgtggtgctcaccctgatttccctgatgacttcagaccagatg
actttcatcctgacaagcgttttggccaccggttacgggaatttgagggacgaggaggac
ccttaccacaagaagagaagtggaggcgagggggccctggacccccctttccacctgatc
acagggaattcaatgagggggatggccggggtgcagcccgaggccctccaggggcatggg
aaggccgtagacctggagatgaacgcttcccccgggatcctgatgacccacgatttcgag
ggcgcagggaagaaagctttcgacgaggggctcccccaagacacgaaggccgtgctcctc
caagaggaagggacaactttcctggtcctgatgactttggtccagaagaagtttttgatg
cttctgatgacacagcccgaggacgagatctcagaggtcgaggccgtggcacccctcgag
ggggatccaggaagtgcttactccccactcctgatgagtttcctcgctttgaaggaggac
ggaagccagactcctgggatggaaaccgagagcccggaccaggtcatgaacactttcgtg
atgctccccgtcctgatcatccccctcacgatggccactcaccagctagcagagagcgtt
cctcttctctccaaggcatggacatggcctccctaccaccccggaagcgcccctggcatg
atggctcgggcacttctgaacacagagagatggaggcccaaggaggcccctcggaggacc
gaggaagcaaaggccgaggtggcccaggaccttcccagagagtgccaaaatctgggcgtt
ccagctctttggatggagaccatcatgatggataccacagagacgaaccttttggtggcc
ctccaggcagcagttcatcttctcgagggggccggagtggcagtaactggggtagaggga
gtaacatga
DBGET
integrated database retrieval system
