Arvicanthis niloticus (African grass rat): 117719709
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Entry
117719709 CDS
T08817
Name
(RefSeq) protocadherin-3-like
KO
K16494
protocadherin beta
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117719709
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117719709
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
REJ
Motif
Other DBs
NCBI-GeneID:
117719709
NCBI-ProteinID:
XP_034373811
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Position
14:complement(50217605..50220435)
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AA seq
791 aa
AA seq
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MPEQRQVVFLTILLLLWKSGSEAIRYSMPEETESGYLVANLAKDLGFKVGKLATRGAQIH
YKGNKELLQLDAETGNLFLKEKLDREALCGATEPCVLHFQIILENPVQFFQTELQLTDIN
DHSPEFPDREMLLKIPESAQPGTVFPLKAAQDPDIGSNAVQNYTVSPNHHFHVVTHSRSD
GRKYPELVLDRTLDREEQPELTLTLTALDGGVPARSGTTAVHIEVVDINDNAPQFIQSLY
EVQILENSPLDALVVTVSARDLDAGIYGNVAYSLFQGDGVSQPFVIDEITGEIRLSKELD
FEGISGYNIEITATDGGDLLGKCTVAIQVLDVNDNPPELTIRKLTVPVPENSAETVVAVF
SISDSDSGDNGRMVCSILNNNIPFLLKPTFENYYSLVTEGPLDRESRAEYNITIMVSDLG
TPRLTTQHTITVQVSDINDNAPAFTQTSYTMFVRENNSPALHIGTISATDSDSGSNALIT
YSLLPPHDPQLDLNSLISINSDNGQLFALRALDYETLKAFEFHVGATDRGAPALSSQALV
HVEVLDDNDNDPFVLYPLQNSSVPCTELLPREADSGYLVTKVVAVDSDSGQNAWLSFQLL
KATEPGLFSVWAHNGEVRTTRLLSERDVPKHRLVLLVKDNGEPQRSVSVTLHVQLVNSFS
QPYLLLPEVAHDSIHRDEEVLTLYLVIALASVSSLFLLSVLMFVGMRLCRKARAASLGVC
SVPEGHFPGHLMDVSGAGTLSQSYQYDVCLSGDSMTGEFKFLKPLIPNVMVQGAGREVKE
GSPCRDSFVFS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacaaaggcaagtcgtttttcttactatattgttgctattgtggaagtctggt
tctgaggccattagatattccatgccagaagaaacagagagtggctacttggtggcaaac
ctggcaaaagatctggggttcaaggtggggaaactggccactagaggagctcagatccat
tacaaaggaaacaaagagctcctgcagctggatgcagagactgggaatttgttcttgaag
gaaaaactagaccgtgaggccctgtgtggggcgacagagccctgtgtgctgcacttccag
atcatactggaaaaccctgtgcagttcttccaaactgaactgcagctcacagatataaat
gaccactctccggagttccctgacagggaaatgcttctaaaaatccctgagagtgcccag
ccagggaccgtgtttcctctgaaggcagctcaggaccctgacatagggagcaacgctgtt
cagaactacacagtcagtcccaaccaccatttccatgtcgttactcacagtcgctcagat
ggcaggaaatacccagagctggtgctggacagaaccctggacagggaggagcagcctgaa
ctcactttaaccctcactgctctggatggtggagtcccagcccggtcaggaaccactgca
gttcacattgaagttgtggatatcaatgataatgccccccagtttatacagtcactctac
gaggtgcagattctcgaaaatagcccccttgatgccttagttgtcacggtgtctgccagg
gatttagatgctgggatatatggcaatgtagcctattctctgtttcaaggtgatggagta
tctcaaccatttgtgatagatgaaatcacaggagaaatacgactgagcaaagagctggat
tttgaaggaattagcggttataacatagaaatcacagccaccgatggaggagacctttta
gggaaatgcactgtggctatacaggtgttggatgtgaatgacaatcccccagagttgacg
attaggaagctcacagtccctgtcccagaaaattccgccgaaactgtagttgctgttttt
agtatttctgattcagattcaggggacaatggaaggatggtgtgttctattctgaacaat
aatattccatttctcctgaaacccacatttgagaattattacagtttagtgacagagggg
ccactagatagagagagcagagctgagtacaacatcaccatcatggtctcagacctgggc
acacccaggctcacaacccagcacaccataacagtgcaagtctctgacatcaacgacaat
gcccctgccttcacccaaacctcctacaccatgttcgtccgcgagaacaacagccccgcc
ctgcacataggcaccatcagtgccacagactcagactctggctccaatgccctcatcacc
tactcgctgctgccgccccacgacccacagctggaccttaactcgctcatctccatcaat
tctgacaatgggcagctgttcgcgctcagggcactggactatgagaccctgaaggccttc
gagttccacgtgggcgccacggaccgaggcgctcccgcactcagcagccaggctctggtg
cacgtggaggtgctggatgacaatgacaatgatccctttgtgctctacccactgcagaat
tcctctgtgccttgcactgaactgttgcccagggaggcggattctggatacctggtcacc
aaggtggtggcagtggactctgactctggccagaatgcctggctgtcattccagttactc
aaggccacagaaccagggctgttcagcgtgtgggcacacaatggcgaggtgcggaccacc
aggctgctgagcgagcgtgatgtgcccaagcacaggctggtgctgctggtcaaggacaat
ggagagcctcagcgctctgtcagtgtcacactgcacgtgcaattggtgaatagtttctct
cagccctacctgcttctgcctgaggtggcgcacgactccattcaccgggatgaagaggtg
ctcacgctgtacctggtcattgccttggcttctgtgtcttcgctctttctcttgtctgtc
cttatgtttgtgggaatgaggctgtgcagaaaggccagagcggcttctctgggtgtctgc
tctgtgcctgagggccactttcctggccacttgatggatgtcagcggtgcggggaccctg
tcccagagctaccagtatgatgtgtgtctatcaggagactctatgactggtgagttcaag
ttcctcaaacccctgattcccaatgtaatggttcagggcgctgggagagaagtgaaggaa
ggttccccttgcagggatagctttgtgttcagttaa
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