Arvicanthis niloticus (African grass rat): 117719712
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Entry
117719712 CDS
T08817
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-8-like
KO
K16494
protocadherin beta
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117719712
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117719712
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
REJ
Motif
Other DBs
NCBI-GeneID:
117719712
NCBI-ProteinID:
XP_034373813
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Position
14:complement(50249587..50252054)
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AA seq
779 aa
AA seq
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METALAKTPEKRQVIFLTILLLLWESGSEAIRYSMPEETGSGYLVANLAKDLGLRVGELA
TRGARIHHDGNKELLQLDTERGNLLLKEKPDREALCGATEPCVLHFQIILENPVQFFQTE
LQLTDINDHSPEFPDTEMLLKIPESAQPGTVFPLKAAQDPDIGSNAVQNYTVSPNLHFHV
VLTVTXDGRKYPELVLDRALDREEQPELTLILTALDGGAPHRSGTTTVRIEVVDINDNAP
QFVQSFYTVEIPENSPLNALVVTVSARDLDTGVHGKVAYSLFQGSGGSQPFVINEITGEI
RLKGALDFETTPYYNMEIVATDTGGFSGKCTVAIQVVDVNDNAPKLTISSLTSSIPENAP
EAVVAVFSVSDPDSGENGRMVCSIQNELPFLLKPTFKNFYTLVTERPLDRESKAEYNITI
TVSDMGTPRLTTQHTITVQVSDINDNAPVFNQTSYTLFVRENNSPALHIGTISATDSDSG
SNALITYSLLPPHDQQLALTSLISINSDNGQLFALRALDYEALQGFEFHVGATDRGSPAL
SSQALVRVVVMDDNDNAPFVLYPMQNASAPCTELLPRAADPGYLVTKVVAVDSDSGQNAW
LSFQLLKATEPGIFSVWAHNGEVRTSRLLSERDVPKHRLLLLVKDNGDPPRSASVMLQVL
LVDGFSQPYLPLPEVALNPTQQEDMLTLYLVIALASVSSLFLLSVLLFVGVRLCKKAREA
SLGDCSIPEGHFPGHLVDVSRAGTLSQSYHYDVCLTEDSGSSDFKFMNPIIPTSLLQDS
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggagacagctctagcaaaaacgccagagaaaaggcaagtcattttccttactatattg
ttgcttctgtgggagtctggctctgaggcaattagatattccatgccagaagaaaccggg
agtggctatttggtagctaacctggcaaaagatctggggctcagggttggggaactggcc
actagaggggcccgaatccaccacgacggtaacaaagagctcttgcagcttgacacagag
cgagggaatttgctcctgaaggaaaaaccagatcgcgaagcactgtgtggggcgacagaa
ccctgtgtgctgcacttccagatcatactggaaaaccctgtgcagttcttccaaacggaa
ctgcagctcacagatataaacgaccactctccggagttccctgacacagaaatgctttta
aaaatccctgagagtgcccagccagggactgtgtttcctctgaaggcagctcaggaccct
gacataggaagcaatgctgttcagaactacacagtcagtccaaacctccatttccatgtc
gtactcacagtcactncagatggcaggaaatacccagagctggtgctggacagagccctg
gacagggaggagcagcctgagctcactttaatcctcactgctctggatggaggtgctcca
cacagatctgggactaccacagttcgaattgaagtcgtggacatcaacgataatgctccc
cagtttgtacagtcattctatacggtggagatccctgaaaacagccccctcaatgcctta
gttgtcacagtctctgccagagatttagatactggcgtacatggcaaagtagcctactct
ctgtttcaaggcagtgggggttctcaaccatttgtaataaatgaaatcacaggagaaatt
cgtcttaaaggggcactggattttgagacaactccatattataacatggaaattgtagct
acagacacaggcggcttttcaggaaaatgcactgtagctatacaggtggtggatgtgaac
gacaatgcccctaaactcaccatatcttcgctcactagttccatcccagaaaatgctcct
gaggctgtagttgctgttttcagcgtctctgacccagattctggggaaaatggaaggatg
gtttgttctattcagaatgaacttccatttcttttaaaacccacattcaagaacttttac
accttagtgacagagaggcccctggacagagagagcaaagctgagtacaacatcaccatc
acagtctctgacatgggcacacccaggctcacaacccagcacaccataacagtgcaggtc
tctgacatcaacgacaacgcccctgtcttcaaccaaacttcctacaccctgttcgtccgt
gagaacaacagccctgccctgcacataggcaccatcagtgccacagactcagactctggc
tccaatgccctcatcacctactcgctgctaccgccccacgaccagcagctggcgctcacc
tcgctcatctccatcaactcagacaatggtcaactgtttgcactcagggcgctggactac
gaggccctgcagggtttcgaattccatgtgggtgccacagaccgaggctcacctgcgctc
agcagccaggctctggtacgcgtggtggtgatggatgacaatgacaacgcgccctttgtg
ctctacccgatgcagaacgcctctgcaccctgcacagaactgttgcccagggcggcagat
cccggctacctggtcaccaaggtggtggcagtggactctgactctggccagaatgcctgg
ctgtcattccagctgctcaaggccacggagcccgggattttcagcgtgtgggcgcacaat
ggcgaggtgcgcacctccaggctgctgagcgaacgtgatgtgcccaagcacaggctgctg
ctgctggtcaaggacaatggtgatcctccgcgctctgccagcgtcatgctgcaggtgcta
ttggtggatggcttctctcagccctacctgcctctgccagaggtggcgctcaaccccaca
cagcaagaagacatgctcacactctatctggttattgctttagcttctgtgtcttcactt
ttcctcttgtctgtgctgctatttgtgggggtgaggctgtgcaagaaggccagggaggct
tctctgggtgactgctctattcctgaaggacactttcctggccacctggtggatgtcagc
agggcggggaccctgtctcagagctaccattatgacgtctgtctgactgaggactctggg
agctcagatttcaagttcatgaaccccattattcccactagtctccttcaggactcctag
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