Arvicanthis niloticus (African grass rat): 117719716
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Entry
117719716 CDS
T08817
Name
(RefSeq) protocadherin beta-6-like
KO
K16494
protocadherin beta
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117719716
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117719716
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
REJ
Motif
Other DBs
NCBI-GeneID:
117719716
NCBI-ProteinID:
XP_034373819
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All DBs
Position
14:complement(50292476..50295472)
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AA seq
784 aa
AA seq
DB search
METALTKTAQQRQVVFLTMLLLLWESGSEAIRYSVPEETESGYLVANLAKDLRLRVGELA
TRGAGIHHRENKELLQLDAEKGNLFLKEKLDREVLCGATEPCVLHFQIILKNPVQFFQTE
LQLTDINDHSPEFLDTEMLLTIPESAQPGTVFPLKAAQDPDIGSNAVQNYTVSSNLHFHV
VTNSRSDGRKYPELVLDRALDREEQPELTLILTALDGGAPHRSGTTTVRIEVVDINDNAP
QFVQSLYEVQIPENIPLDALVVTVSARDLDAGIYGNIAYSLFQGDGDSQPFVIDEITGEI
RLSKKLDFEVTPYYNMEIAAKDGGGLSGKCIVAVQVLDVNDNAPELAISTLSSPIPENSP
ETVVAVFGIFDPDSGDNGRMVCSIQNELPFLLKSTFENYYTLATERPLDRESKAEYNITI
TVSDMGTPRLTTQHTITVQVSDINDNAPAFTQTSYTLFVHENNSPALHIGTISAIDSDSG
SNAHITYSLLPSQDPLLALASLISINAENGQLFALRALDYEALQAFEFRVGATDGGSPTL
SSQALVRVVVLDDNDNAPFVLYPLQNASAPCTELVPRAAEPGYLVTKVVAVDSDSGQNAW
LSFQLLKATEPGLFIVWAHNGEVRTTRLLSERDVPNHRLLLLVKDNGEPQRSASVTLQVL
LVDGFSQPYLPLPEVALDPTQDEDNLTLYLVIALASVSSLFLFSVLLFVGVRLCRRARAA
SLGGCSVPEGHFPGHLVDVSGMGTLSQSYQYEVCLMGESGTTDFKFLKPSIPNSLISDNY
MLSS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggagacagcgctaacaaaaacggcacagcaaaggcaagttgtttttcttactatgttg
ttgcttttgtgggagtctggttctgaggcaattagatactctgtgccagaagaaacagag
agtggctacttggtggcaaacctagcaaaagatctgaggctcagggtcggagaactggcc
actagaggggcaggaatccatcacagagaaaacaaagagctcttgcagctggatgcagag
aaaggaaatctgttcctgaaggaaaaactagaccgtgaggtgctgtgcggggcgacagag
ccctgtgtgctgcacttccagatcatactgaaaaaccctgtgcagttcttccaaactgaa
ctgcagctcacagatataaacgaccactctccagagttccttgacacagaaatgctttta
acaatccctgagagtgcccagccagggactgtgtttcctctgaaggcagctcaggaccct
gacatagggagcaacgctgttcagaactacacagtcagttccaaccttcatttccatgtc
gttactaacagtcgctcagatggcaggaaatacccagagctggtgctggacagagccctg
gacagggaggagcagcctgagctcactttaatcctcactgctctggatgggggtgctcca
cacagatctgggactaccacggttcgaattgaagtcgtggacatcaacgataatgctccc
cagtttgtacaatcgctctatgaggtgcagattcctgagaatatcccccttgatgcctta
gttgtcacggtctctgccagggatttagatgctggaatatatggaaatatagcctactct
ctgtttcaaggtgatggagattctcaaccatttgtaatagatgaaatcacaggagaaatc
cgcctaagcaaaaagttggattttgaggtaactccatactataatatggaaatcgcagcc
aaggatggagggggcctttcaggaaaatgtattgtggctgtacaggtgttggatgtgaat
gataacgccccagagttggccatctccacgctctcaagccctatccctgaaaactcccca
gagactgtagttgctgtttttggtatttttgatccagattccggggacaatggaaggatg
gtgtgctctattcagaatgaacttccatttcttttaaagtccacatttgagaactattat
actttagcgacagagaggccactggacagagagagcaaagctgagtacaacatcaccatc
actgtctcagacatgggcacacccaggctcacaacccagcacaccataacagtgcaggtc
tctgacatcaacgataacgctcctgccttcacccaaacctcctacaccctgtttgtccac
gagaacaacagccctgccctgcacataggcaccattagtgccatagactcagactcaggc
tccaatgcccacatcacctactcgttgctgccatcccaagacccgctactggctctcgcc
tcgctcatctccattaatgctgaaaatgggcaactgtttgcgctcagggcattagactat
gaggccctgcaggcctttgagttccgcgtgggagccacagatggaggctcgcccacgctc
agcagccaggctctggtgcgcgtggtggtgctggatgacaatgacaatgcgcccttcgtg
ctctacccacttcagaacgcctctgcaccctgcactgagctggtgcccagggcggcagag
cctggatacctggtcaccaaggtggtggcagtggactctgactctggccagaacgcctgg
ctgtcgttccagctgctcaaggccacagagcccgggctgtttatagtgtgggcgcacaat
ggcgaggtgcgcaccaccaggctactgagtgagcgcgatgtacccaatcacaggctgttg
ttactggtcaaggacaatggagagcctcagcgctctgccagtgtcactctgcaggtgctg
ctggtggatggcttctctcagccttaccttcctctgccagaggtggcgctggatcctaca
caggacgaagataatctcacattgtatcttgtcattgccttggcatctgtgtcttctctc
ttcctcttttctgtgctgctgtttgtgggggtgagactgtgcaggagggccagggcggcc
tctctgggaggctgctctgtgcctgagggacactttcctggccacttagtggacgtcagc
ggtatgggaacactgtcccagagctaccagtatgaggtgtgtctgatgggagaatctggg
acaacagattttaagttcctgaagcccagcattcccaacagtctgatttcagacaattat
atgttgagtagttaa
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