Arvicanthis niloticus (African grass rat): 117719784
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Entry
117719784 CDS
T08817
Symbol
Sncaip
Name
(RefSeq) synphilin-1 isoform X1
KO
K04558
synphilin-1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu05012
Parkinson disease
anu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
117719784 (Sncaip)
05022 Pathways of neurodegeneration - multiple diseases
117719784 (Sncaip)
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Gene cluster
GFIT
Motif
Pfam:
SNCAIP_SNCA_bd
Ank_2
Ank_4
Ank_5
Ank
Ank_3
Motif
Other DBs
NCBI-GeneID:
117719784
NCBI-ProteinID:
XP_034373977
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Position
14:complement(35596876..35736535)
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AA seq
965 aa
AA seq
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MEAPEYLDLDEIDFSDDISYSVTSLKTIPALCRRCDSQNEDRSVSSSSWNCGVSTLITNP
QKPTGIADVYSKFRPVKRVSPLKHQPETLENNENDDQKNNTVEYQKGGETDQGPQPEELS
PEDGVGGLPGKGSEPSQALGELEHYDLDMDEILDVPYIKSSQQLAPLTKVTSEKRILGLC
TTINGFSAKTCPIASTENSTPNMTPFCVLSPVKSPHLRKAPTVLRDQHKLSTEESESSPA
LGKCGPVYESENHSKDFLNKVFSDPHSRKIEKSGPDCKLRSFHLQSSTAGAKPEEQINGM
NWTNAQGTEERTEYLKKVRSILNIVNEGQISLLPHLAADNLDKIHDENGNNLLHVAASKG
HAECLQHLTSLMGEDCLNERNTEQLTPAGLAIKNGQLECVRWMVSETEAIAELSCSKDFP
SLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQEGNSAVHVASQHGYLGCIQTLVEYGA
NVTMQNHAGEKPSQSAERHGHTLCSRYLVVVETCMSLASQVVKLTKQLKEQTVERVTLQS
QLQQLLEAQKSEGKSLPSSPSSPSSPASRKSQWKILDTDDESTGKSKLGAQEGIQVLGSV
SVSSRTRTKGKDEDSDKILRQLLGKEISENVCTQEKLSLEFQDAQVSSRNLKKIPLEKRE
LKLARLRQLMQRSLSESDTDSNNSEDPKNTPVKRADRPRPQPIVESVENVDSAESLHLMI
KKHSLASGRRFPFGIKASKSMDGHSPSPTSESSEPDLDSHCPSLGMTPPTQPSTEATQSS
PDSATAQKVATSPKSALKSPSSKRRTSQNSKLRVTFEEPVVQMEQTSLELNGEKDKDKGR
APQRTSESGEQMKRPFGTFRSIMESLSGNQNNNNNYQPASQLKTCTLPLTSLGRKTADAK
GNPVNPASKGKNKAAMYSSCIQLPSNALLEEHLRDYARHNDIKRDTKKTYDMKHIAEPEP
KELFL
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggaagcccctgaataccttgatttggatgaaattgactttagtgatgacatttcttat
tcagtcacatctctcaagaccatcccagcactgtgcagaagatgtgactcacaaaacgaa
gaccgatcagtttctagctctagctggaattgtggtgtctcaactctcattacaaaccca
caaaagcccactggaatcgctgatgtatacagtaagttccgcccagtgaagcgagtttct
ccactgaaacatcagccagagactctggagaacaatgaaaatgacgaccaaaagaataat
acagtggaataccagaaaggaggggagactgaccagggcccccagcctgaggagctcagc
cctgaagatggagttggggggttgccaggcaaaggctcagagcccagccaggcactgggg
gagctggagcactatgaccttgacatggatgagattctggatgtgccttacattaaatcc
agccaacagctggcccccctcaccaaggtgacttcagagaaaaggattctgggtttatgc
acaaccatcaatggcttctctgccaaaacctgccctatcgcaagcactgagaactccaca
cccaacatgactccattttgtgttctttctcctgtgaaaagccctcacttacggaaagca
ccaactgtcctccgggaccagcacaagctctctacagaagaatccgagagctcgcctgct
ctgggtaaatgtggccctgtttatgaatcagaaaaccacagtaaagacttcttaaacaag
gtctttagtgatccccatagtcggaaaattgagaagtctgggccagactgcaagctcaga
tccttccacctgcagtcctcaacagcaggggccaaaccagaggagcagatcaacggcatg
aactggaccaatgcccaaggcacagaagagaggactgagtacctgaagaaagtaagaagc
atactgaacattgtgaatgaaggacagatatcactcttgccacacctagctgcagacaat
ctggacaaaattcacgacgagaacggaaacaatctgttacacgttgctgcatccaagggc
catgcagaatgtctgcagcacctcacgtcactgatgggtgaagactgtctgaatgagcgg
aacacagagcagctgactccagcaggcctggccatcaagaatggtcagctggagtgcgtg
cgctggatggtaagcgagacagaagccattgcagaactgagctgttccaaggacttccca
agcctcattcattacgcaggctgctatgggcaggaaaagattcttctgtggcttcttcag
ttcatgcaagaacaaggcatctcattggatgaagtggaccaggaaggcaatagcgctgtt
catgtcgcctcacaacatggctaccttggatgcatacagaccctggtggaatatggagca
aatgtcacgatgcagaaccacgctggggaaaagccgtcccagagtgctgagcggcacggg
cacaccctatgctcccgctacctcgtggtggtagagacatgcatgtcactggcctcacaa
gtggtaaagttgaccaagcagctgaaggagcagacagtggagcgtgtcacactgcagagt
caactccaacaacttctagaagcccagaagtcagagggcaagtccctcccttcttcaccc
agttcaccttcctcgccagcttctagaaagtcccagtggaaaattctagatacagatgac
gagtctacaggcaaaagcaaactgggagcccaggagggaatacaagtccttggaagcgtg
tcagtctccagcaggactaggaccaaaggaaaagatgaagactctgataaaatcctacgt
cagttattggggaaagaaatatcagagaatgtctgcacccaggaaaagctgtcattagaa
ttccaggatgctcaggtatcctctaggaatttgaaaaaaatccctctagagaagagggaa
ctgaagctagccagactgaggcagctgatgcagagatcgttgagtgaatctgacacggac
tcaaacaactctgaagaccccaaaaatactcctgtgaaaagagcagacaggccgagacca
cagcccattgtggaaagtgtggagaatgtggacagcgcagaaagcttacacctgatgata
aagaaacactctctggcatcaggacgcaggtttccttttggtataaaggcctccaaatct
atggatggacacagcccatctcccacctcagaaagcagtgaaccagacttggactcccac
tgcccaagcctggggatgactcctccaacccagccttccacagaagccactcagtcgagt
cctgacagtgccactgctcagaaagttgccacaagccccaagagtgccctcaagtctcca
tcatccaagcgccgaacatcccaaaactcaaagcttagagtgacctttgaagagcctgtc
gtgcaaatggagcaaactagccttgaactaaatggagaaaaagacaaagataagggcagg
gcccctcagaggactagtgaatcaggagaacaaatgaaaaggccttttggaaccttccga
tccattatggagagtttaagtgggaatcagaacaacaataataactaccagccagccagc
cagctgaagacctgcacactacctttgacatcacttggaaggaagacagcagatgccaag
gggaatcctgtgaaccctgccagcaaaggaaagaacaaggcagcgatgtacagcagctgt
atccaacttccttctaacgcgctgcttgaggagcatctacgtgactacgcacggcataat
gacatcaaaagagacacgaagaaaacctacgacatgaagcacatcgctgagccagagcct
aaggaactcttcttataa
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