Arvicanthis niloticus (African grass rat): 117720026
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Entry
117720026 CDS
T08817
Symbol
Ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117720026 (Ythdc2)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117720026 (Ythdc2)
Spliceosome [BR:
anu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117720026 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
Ank_4
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
117720026
NCBI-ProteinID:
XP_034374391
LinkDB
All DBs
Position
14:complement(42854336..42923813)
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AA seq
1436 aa
AA seq
DB search
MSRPSSVSPRPPAPSGGGTGGGGGGGGPASCGPGGGGRAKGLKDIRIDEEVKIAVNIALE
RFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAM
MTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGI
PQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDC
FKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNG
VLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVN
LFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEW
YSAQENTFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLS
DIWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVH
SKASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSTEDRELLKA
YHHSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTH
RYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSF
DALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQ
ELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLAD
LPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTF
SDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARG
GGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQY
KKIPPANGQTAAVQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNAL
QEPSSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLF
LRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWR
SNNSRKSSADTEFADGSTTAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVK
STDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTP
SNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWI
RKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTSD
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctcgccgcgtccgccggctcctagcggaggcggcaccgga
ggcggcggcggcggcggaggccccgcttcttgtggtcccggaggcgggggtcgggccaag
ggcctcaaagacattcgtatcgacgaggaggtgaagatcgccgtcaacatcgctctggag
cgcttccgatacggcgaccagcgagaaatggaatttccttcttctttgaccagtacggaa
agagcttttattcaccgactaagtcaatctcttggtttagtttctaaaagtaaaggaaag
ggagcaaatagatacctaactgtgaagaagaaagatggatcagaaacagctcatgcaatg
atgacctgtaatttgactcataatacaaaacatgctgttaggagcctaattcagagattt
cctgtcaccaataaagaacgtactgaacttctacctaaaacagaaagaggaaatgtgttt
gcagttgaagctgaaaaccgagaaatgagcaagacaagcgggcgactcaacaatggcata
cctcaagttcctgtgaaaagaggagagtctgaatttgactcattcaggcagtctttacca
gtttttgaaaaacaagaagaaattgttaaaataattaaggaaaataaagtagttttgatt
gtaggagaaactgggtctggaaagaccacacagattcctcagttcctgttagatgattgc
tttaaaaatggcatcccctgccgaatattctgtactcaaccaagacgattagcagcgatt
gctgtggctgaaagagttgctgcagagagaagggagagaattggtcaaacaattggttat
cagatccgcttagaaagcagggtttcgccaaagacacttctgacattttgcactaatggg
gtattgcttcgtacattgatggcaggtgatagcacattgtcaactgtgacccatgttatt
gtggatgaagttcatgaaagggaccgattcagtgattttttacttacaaagttaagagac
ttgttgcaaaagcacccaactttgaaactaattctttctagtgctgccttggatgtgaat
ctcttcataagatattttggaagttgtccagtaatatatatacagggaagaccatttgaa
gtaaaagaaatgtttctggaagatattttaagaactactggatataccaacaaagaaatg
ttaaagtacaaaaaagaaaagcaacgagaggagaaacaacagaccaccctcacagaatgg
tactcggctcaagagaatactttcaagcctgaatctcagagacagagagctgttgccagt
gtgtctgaagagtatgacttactggatgatggaggtgatgctgtcttcagtcagctgaca
gaaaaagatgtgaattgccttgaaccatggctaatcaaggaaatggatgcctgcctttct
gacatatggctgcataaagatgttgatgcttttgctcaggtctttcatcttattttaact
gaaaatgttagtgttgattataggcatagtgagaccagtgcaacagctctgatggttgct
gcaggacggggttttacgagtcaagtagagcaattgattagtatgggagccaatgtccac
agtaaagcatcaaatggctggatggctttagattgggctaagcactttggacagactgaa
attgtggatcttctagaatcttacagcgcttcgttggaatttggaaatctagatgaaagt
tccttggttcaaacaaatggaaatgacctcagtacagaagacagagagctgttgaaagct
taccatcatagttttgatgatgaaaaagtagacttggatttgatcatgcatcttctctat
aatatctgccatagttgtgatgctggtgcaatattaatttttctacctggatatgatgaa
attgttggtttgagggatcgtatcctctttgatgacaagcggtttgctgacaatacacat
aggtatcaagtctttatgcttcattcaaatatgcagacatctgatcaaaagaaggtatta
aaaaatccacctgcaggtgtccgaaaaataatcctttcaaccaatattgctgagacaagc
atcactgtcaatgatgttgtctttgttattgattctggtaaggtgaaagagaaatccttt
gatgcactgaattttgttacaatgttaaaaatggtatggatttccaaagctagtgccata
cagcgcaaaggcagggcgggacgatgtagacctggaatttgtttccgtctgttcagtaga
cttcgatttcagaacatgctggaatttcagactccagaactcttgagaatgccattgcag
gaactttgtttacataccaagctgttagccccagttaattgtaccattgccgacttcctt
atgaaagctcctgaaccacctcctgctttaattgtaagaaatgccgttcagatgcttaag
acaatagatgcaatggatgcatgggaagatctgactgaacttgggtatcatttggctgat
ttgccagtagaaccacatcttgggaaaatggtcctgtgtgctgttgttttaaagtgtctg
gaccccatccttacaattgcctgcacactagcttatcgtgatccttttgtactgcctacc
caggcctctcaaaaacgtgcagctatgctttgtaggaaacgtttcactgcagggactttc
agtgaccacatggcacttctgagagcatttcaggcatggcagaaagcacgaagtgatggg
tgggagcgtgccttttgtgaaaagaattttctttcacaagctaccatggaaatcattata
ggcatgagaacacaattgcttggtcaacttagagcatcaggttttgttagagcacgaggt
ggtggtgacattcgagatgttaacacaaactccgagaactgggctgttgttaaagctgca
ttggtagcaggcatgtatcctaatttagtccatgtggacagagagaatgtagtattgaca
gggccaaaggaaaaaaaagtacgcttccatcccacttcagttctcagtcagccgcaatac
aaaaagattcctccagccaatggtcaaactgcagcagttcaggcattgcccacagattgg
cttatttatgatgagatgaccagagctcataggattgctaacataagatgttgttcagca
gtgacacctgttactgtcctagtgttctgtggaccagcgagactagcaagtaatgctctt
caggagccttcgtcttttagagcggacggcattcccaacgacagcagtgacagtgagatg
gaagacagaaccactgccaatttggctgctttgaaacttgatgaatggcttaacttcaaa
ttagagccagaggctgccagtttattgctacagctgagacagaagtggcatagcttgttt
ttacgccgaatgagagcgccatctaaaccttggtctcaagtagatgaagctaccatacga
gcaattatagctgttttaagcactgaagaacagtctgcaggtttacagcaaccatctgga
attggccagaggccaagacccatgtcttcagaagaacttcctttggcttcatcttggaga
tccaataatagtaggaaaagttcagctgacactgagtttgctgatggatctactactgca
gaaagagtactgatgaaatctccatctccagccttacatccacctcagaagtataaagat
agaggaattttacatcctaaacggagcactgatgacaggtctgatcagtcatctgtgaaa
tccacagacagcagcagttatccaagtccttgtgctagcccctctcctccatcctcagga
aagggctcaaaatctccttcaccaagaccaaacatgcctatacgttacttcataatgaag
agtagcaatctgagaaaccttgaaatttctcaacagaagggtatctggtctacaacccct
agtaatgagcggaagctaaatcgagcattttgggagagcagcatggtctacttggtattt
tctgttcaaggatctggacatttccagggattttctaggatgtcttctgaaataggaagg
gagaagagccaggactgggggtcagctggactaggtggagtatttaaagtggagtggata
cgcaaagaaagccttccctttcagtttgcacaccatttgctcaatccttggaatgacaac
aagaaagtacagataagcagagacgggcaggagctagaacctcaggttggggaacagttg
ctccagttgtgggaacgtcttccattgggagaaaaaactacatctgattga
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