Arvicanthis niloticus (African grass rat): 117720209
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Entry
117720209 CDS
T08817
Symbol
Pcdh12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117720209 (Pcdh12)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117720209 (Pcdh12)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
117720209
NCBI-ProteinID:
XP_034374579
EnsemblRapid:
ENSANLG00005015897
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Position
14:49399456..49414331
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AA seq
1179 aa
AA seq
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MMLLLPFLLGLLGPGSYLFISGDCQEMATVTVKFQVTEEVPSGTVIGKLSQEPGVEKRRG
KVGDAFQILQLPQALPIRMNSEDGLLSTSGRLDREKLCRQQDPCLVSFDVLATGASALIH
VEIQVLDINDHQPQFPKDEQELEISESASLYTRIPLDRALDQDTGPNSLYSYSLSASEHF
ALDVIVGPDETKHAELVVVKELDREVHSYFDLVLTAYDNGNPPKSGTSVVKVSVLDSNDN
SPVFAESSLALEIPEDTAPGTLLINLTATDPDQGPNGEVEFFFGKHVSPEVMNTFGVDAK
TGQIILRQPLDYEKNPAYEVDVQARDLGPNSIPGHCKVVIKVLDVNDNAPSIHITWASQT
SLVSEDLPRDSFIALVSANDLDSGHNGLVYCWLNQELGHFRLKRTNGNMYMLLTNATLDR
EQWPIYTLTVFAQDQGPQPLSAKKELQIQVSDVNDNAPVFEKSQYEVSTWENNPPSLHLI
TLKAHDADLGSNGKVSYRIKDSPVSHLVVIDFETGEVTAQRSLDYEQMAGFEFQVIAEDR
GQPQLTSSISVWVSLLDANDNAPEVIQPALSEGRATLSVLVNASTGHLLLPIENPSGMDP
VGTSTSPKATHSPWSFLLVTIVARDADSGANGELLYSIQSGNDAHLFVLSPSLGQLFINV
TNASSLIGSQWDLGIVVEDQGSPSLQTQMSLKVVFVTSVDHLRDSVHEPGVLNTPTLALI
CLAALLAIFGLILALFVSICWTEKKDNGAYNCREAESTYRHQPRRPQKHIQKADIHLVPM
LRAQEDETDKVRSSHKDTNKETLMEAGWDSCLQAPFHLTPTLYRTLRNQGNQGALAESQE
VLQDTFNFLFNHPRQRNASRENLNLPESPPALRQPLLRPLKVPGSPISRVTGDQGSEEAP
QSPPASSATLRRQRNLNGKVSPRGESGPHQILRSLVRLSVAAFAERNSVEEPAGDSPPVQ
QISQLLSLLHQGQFQPKPNHRGNKYSAKPGSSRGTISDTDGLGVRPGGQAEPDLEEGPPS
PGEDLSVKRLLEEELSNLLDPNTGLALDKLSPPDPAWVARLSLPLTTNYRDNLSSPDVAA
SEEPRTFQTFGKTVGPGPELSPTGTRLASTFVSEMSSLLEMLLEQHTVPVEAATAALRRL
SVCGRTLSLDLATSGGSGSEAQLGRKKAAESRLGCGRNL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgatgctacttctgccattcctgctcgggctcttagggccaggaagctacttgttcatt
tcgggggattgtcaggagatggccactgtcacagtgaagttccaagtgacagaggaagtg
ccgtctggcacagtgatagggaaactgtcccaagaaccaggagtggagaagaggcgtggg
aaggtaggggatgccttccagattctgcagctgcctcaggcactgccgattcggatgaac
tctgaggacggcctgcttagcacttccggccggctggatcgggagaagctatgtcggcag
caagatccctgcctggtgtcctttgatgtgcttgccacaggggcttctgctctaattcat
gtggaaattcaggtgctggacatcaatgatcaccagccacagtttcccaaagatgagcag
gagttggaaatctctgagagtgcctccctgtacacacgaatccccttggacagggctctt
gatcaagacaccggtcctaacagtttatattcctactccctgtctgccagtgaacacttt
gccctggatgttattgtgggccctgatgagaccaaacatgcagagcttgtggtggtgaag
gagttggacagggaagtccactcatattttgatctggtgctgactgcctatgacaatggg
aatccccctaagtcaggtaccagtgtggtcaaggtcagtgtcctggattccaatgacaat
agtccagtgtttgctgagagttcactagcactagaaatcccagaagacactgctcctggt
actcttctcataaacctgactgctacggatccagaccaaggacccaatggggaggtagag
ttcttctttggcaagcatgtgtccccagaggtgatgaatacctttggtgtagatgccaag
acaggccagatcattctgcgccaacccctagattacgagaagaaccctgcctatgaggtg
gatgtccaagcaagggacttgggtcccaattccatcccaggtcattgcaaagttgtcatc
aaagttctggatgtcaatgacaatgccccaagcatccatatcacatgggcctcccagacg
tccctggtgtcagaagatcttcccagggacagtttcattgctcttgtcagtgcaaatgac
ttggactcgggacacaatggtctagtctactgttggctgaaccaagagctgggccatttc
agactgaaaaggactaacggcaacatgtacatgctgctcaccaatgccacactggacaga
gaacagtggcccatatacactctcaccgtgtttgctcaagaccaaggaccccagccctta
tcagctaagaaggagctccaaatccaggtcagtgatgtcaatgacaatgcccctgtgttt
gagaagagccagtatgaggtctccacttgggaaaacaacccaccctctcttcaccttatc
acgctcaaagctcatgatgctgacttgggcagtaatggaaaagtgtcataccgtatcaag
gactcccccgtttctcacttagtcgttattgactttgaaacaggagaagtcactgctcag
aggtcactggactatgaacagatggcaggcttcgagttccaggtgatagcagaggacaga
gggcaaccccagctcacatccagcatctcggtgtgggttagccttttggatgccaatgat
aatgccccagaagtgattcagcctgcgctcagcgaaggcagagccaccctttcggtgctt
gtgaatgcctccacgggccaccttctgttgcccattgagaatcccagtggcatggatcca
gtaggtactagtacatcaccaaaggctacccacagcccctggtcttttcttttggtgaca
atcgtggcaagggatgcagactcgggggccaatggggaactcctctacagcattcaaagt
gggaatgatgctcatctttttgtccttagcccgtccttggggcagctattcattaatgtc
accaatgccagcagcctcatcgggagtcagtgggacctggggatagtggtagaggaccag
ggcagcccctccttgcagacccaaatgtcattgaaggtcgtgtttgtcaccagtgtggac
cacctaagggactctgttcatgagcccggagttctgaacacaccaacgctggctttgatc
tgcctggctgcattgctagccatctttggattgatcttggctttgttcgtgtccatctgc
tggacagagaaaaaggataatggggcctacaactgtcgagaagctgagtcaacataccgc
catcagcccaggaggccccagaaacacattcagaaggcagatatccacctggtgcctatg
cttagggcccaggaggatgagactgacaaagttaggtcatctcacaaggataccaataag
gagacattgatggaggctggctgggattcctgcctgcaggcccccttccacctcacacca
acgctatacaggaccctgcgtaaccaaggcaaccagggagcactggctgagagccaggag
gtactgcaggacaccttcaactttctcttcaaccatcccaggcagaggaatgcctctcgg
gagaacctaaaccttcctgagtccccacctgccttacgccagccactcttaaggcctctg
aaggtgcctggcagccccatatcgagggtgactggtgaccaaggcagtgaggaggcccca
cagagcccaccagcatcctctgcaaccctaagacgacagcggaatctcaatggcaaagtg
tctcctagaggagagtccggtcctcatcagattctgaggagcctggttcggctctctgtg
gctgcttttgcggaacggaactctgtggaggagcctgctggggattctcctcctgtccag
caaatctcccagctgctgtccttgctgcatcagggccaattccagcccaaaccaaaccac
cgaggaaataaatattcggccaagcccggcagcagcaggggtaccatttcagacacagat
ggcctaggtgtcaggcctggtggccaagcagaacctgacctggaagaagggcccccgagc
ccaggggaggacctttctgtaaagcgacttctagaagaagagctgtcaaacctgctggac
cctaatacaggtctagccctggacaagctgagtccccctgacccagcctgggtggcgaga
ctgtcattgcccctcactaccaattaccgagacaatttgtcttcccctgatgttgcagcg
tcagaggaaccgagaaccttccagacattcggcaagacagtcggaccagggcctgagcta
agcccaacaggcacgcgcctggccagcactttcgtctcagagatgagctcactgctggag
atgttgttggagcagcacactgtgcctgtggaagctgcgaccgcagctttgcggaggctc
tcggtgtgcgggaggaccctcagtctggacctagccaccagtgggggttcgggctcagaa
gcacagctgggtaggaagaaagcagctgagagcagacttggctgtggcaggaatctatga
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