Arvicanthis niloticus (African grass rat): 117720584
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Entry
117720584 CDS
T08817
Symbol
Cnot4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117720584 (Cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117720584 (Cnot4)
03019 Messenger RNA biogenesis [BR:
anu03019
]
117720584 (Cnot4)
04121 Ubiquitin system [BR:
anu04121
]
117720584 (Cnot4)
Enzymes [BR:
anu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117720584 (Cnot4)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117720584 (Cnot4)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117720584 (Cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117720584 (Cnot4)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117720584 (Cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Rtf2
Nup35_RRM_2
DZR_2
zf-CCCH_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117720584
NCBI-ProteinID:
XP_034375021
EnsemblRapid:
ENSANLG00005015682
LinkDB
All DBs
Position
15:28087398..28187097
Genome browser
AA seq
710 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPSD
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL
SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHSAAPTNANSLNSTFSVLPQRFPQFQQHR
AVYNSFGFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPIAD
NNSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSWDSP
GSWTDPAIITGVPASSGNTLDSIQDDNPPHWLKSLQALTEMDGPSAASSQPHHSAPFSTQ
IPLHRASWSPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcccgatgcaaaggaagaccctgtggaatgccctctttgcatggagccc
ttggaaatagacgatattaactttttcccttgcacctgtggctaccagatatgccgattt
tgttggcatcgaattcgcactgatgagaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttacaaaccactttcccaggaagaattgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacaaaaaatctcagaaaatcgaaaacatttg
gctagtgtacgtgttgtacaaaaaaaccttgtatttgttgtaggtctgtcacagcgccta
gcagacccagaagttttaaaacgaccagagtattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccgagtgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagcaatacagtgtgtcaacaatgtggtg
gtagatggcaggacactaaaggcatctttaggtacaacaaagtactgcagttatttctta
aagaacatgcagtgcccaaagcctgactgcatgtatctacatgaattgggagatgaggca
gccagcttcacaaaagaggaaatgcaggcgggtaagcaccaagagtatgaacagaagctc
ctccaagaattatataaattaaatcccaattttcttcagctatctacgggttcagttgat
aagaataagaacaaagtaacaccattacaaagccccattgacaaaccttcagattctctc
agtatagggaatggtgataattcccaacagatatctaacagtgacacgccttcaccacca
cctggtttatcaaaatccaatcctgtcatccccatcagttcatccaatcacagtgcaagg
tctccttttgaaggggcagtaacagagtcacagtcattattctcagacaattttcgccac
cccaaccctataccaagtgggcttcctccttttcccagctctccacagacacccagtgat
tggcctacagctccagaaccacagagcctcttcacatcagaaacaatcccagtatcatca
tctacagactggcaagcagcattcggctttggttcttctaaacaaccagaggatgacttg
gggtttgatccctttgatgtcactcgaaaagccttagcagacctgattgagaaggaactt
tccgtccaagatcaaccttccctttctcccacgtctcttcagaactcctcctcacacact
acaaccgccaaaggtccaggctctggattcctgcattctgctgcacctacaaatgccaac
tctcttaatagtaccttttcagtcttgccacagaggttccctcaatttcagcagcaccga
gcagtttataattcgttcggttttccaggccaggcagcccgctatccttggatggccttt
ccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaatagtaatttc
ttggacttgaatctcccgccacagcacaacacaggtctgggagggatccccatagcagac
aacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctacccaacattaacatcaactttggtggactgcccaattcttcttccccctccaacgcc
aaccacagtgcaccaacgtccaacactgccaccaccgacagcgtgagttgggacagccct
ggcagctggacagacccagccatcatcacaggtgttccagcgtcttcaggaaacacttta
gactctattcaagacgacaatcctccacactggctaaaatccctacaggccctcacagag
atggacggccccagcgctgcctcgtcacagccccaccacagcgcccccttcagcacacag
atccctctgcacagagccagttggagcccctacccacctccttcaaatccttccagcttc
cactccccacccccaggcttccagacagccttcagaccccccagcaaaacccccacagat
ctgctacagagttcaacactggaccgccactaa
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