Arvicanthis niloticus (African grass rat): 117720757
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Entry
117720757 CDS
T08817
Symbol
Shh
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04340
Hedgehog signaling pathway
anu04360
Axon guidance
anu05200
Pathways in cancer
anu05205
Proteoglycans in cancer
anu05217
Basal cell carcinoma
anu05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117720757 (Shh)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
117720757 (Shh)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117720757 (Shh)
05205 Proteoglycans in cancer
117720757 (Shh)
09162 Cancer: specific types
05226 Gastric cancer
117720757 (Shh)
05217 Basal cell carcinoma
117720757 (Shh)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
anu01002
]
117720757 (Shh)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117720757 (Shh)
Peptidases and inhibitors [BR:
anu01002
]
Cysteine peptidases
Family C46: hedgehog family
117720757 (Shh)
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Morphogens
117720757 (Shh)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
117720757
NCBI-ProteinID:
XP_034375305
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Position
15:complement(4436614..4446841)
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AA seq
438 aa
AA seq
DB search
MLLLLLARCFLVVLASSLLVCPGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGA
SGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWP
GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESK
AHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLAADDQGRLLYSDF
LTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSGPTPGPSALFASRVRPGQ
RVYVVAERGGDRRLLPAAVHSVTLREEAAGAYAPLTAHGTILINRVLASCYAVIEEHSWA
HRAFAPFRLAHALLAALAPARTDGGGGDSIPAPQSAAEARGAGPAAGIHWYSQLLYHIGT
WLLDSETLHPLGMAVKSS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgctgctgctggccagatgttttctggtggtccttgcttcctcgctgctggtg
tgccccgggctggcctgcgggcccggcagggggtttggaaagaggcggcaccccaaaaag
ctgacccctttagcctacaagcagtttatccccaacgtagccgagaagaccctaggggcc
agcggaagatatgaagggaagatcacaagaaactccgaacgatttaaggaactcaccccc
aattacaaccccgacatcatatttaaggatgaggaaaacacgggagcagaccggctgatg
actcagaggtgcaaggacaagctaaatgccttggccatctctgtgatgaaccagtggccc
ggagtgaagctgcgagtgaccgagggctgggatgaagacggccatcattcagaggagtct
ctccactatgagggccgagccgtggacatcaccacatccgaccgggaccgcagcaagtac
ggcatgctggctcgcctggctgtggaggccggcttcgactgggtctactacgagtccaaa
gcccacattcattgctccgtgaaagcagagaactccgtggcggccaaatccggcggctgc
ttcccaggatcggccacagtgcacctggagcagggcggcaccaagctggtgaaggaccta
cgtcccggggaccgcgtgctggcggctgatgaccagggccggctgctgtacagcgacttc
ctcaccttcctggaccgcgacgatggcgccaagaaggtcttctacgtgatcgagacgcgg
gagccacgcgagcgcctgctgctcaccgccgcgcacctgctcttcgtggcgccgcacaac
gactcggggcctacgcccgggccgagcgcgctcttcgccagccgcgtgcgcccggggcag
cgcgtgtacgtggtggctgaacgcggcggggaccgccggctgctgcccgccgcggtgcac
agcgtgacgctgcgagaggaggcggcgggcgcgtacgcgccgctcacggcccacggcacc
attctcatcaaccgggtgctcgcctcgtgctacgccgtcatcgaggagcacagctgggca
caccgggctttcgcgcccttccgcctggcgcacgcgctgctggccgcgctggcacccgcc
cgcacggacggcgggggcggggacagcatccctgcaccgcaatctgcagcggaagcgagg
ggcgccgggccggctgcgggcatccactggtactcgcagctgctctaccacattggcacc
tggctgttggacagcgagaccctgcatcccttgggaatggcggtcaagtccagctga
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