Arvicanthis niloticus (African grass rat): 117721268
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Entry
117721268 CDS
T08817
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117721268 (Upf1)
03015 mRNA surveillance pathway
117721268 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117721268 (Upf1)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117721268 (Upf1)
5.6.2.5 RNA 5'-3' helicase
117721268 (Upf1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117721268 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117721268 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117721268
NCBI-ProteinID:
XP_034375743
LinkDB
All DBs
Position
16:59115185..59136511
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AA seq
1124 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAPGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKE
QKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKTK
TGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacactcaccttcttggacactgaggaa
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggcccgggcggagcg
ggcgcaggcggcgcgcctggccagctcgacgcgcaagttggaccagagggcatcttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagctgctggctgagctgaacttt
gaggaagatgaagaggacacatactacaccaaggacctcccagtccatgcctgcagttac
tgtggaatccatgatcctgcctgcgtggtttactgtaataccagcaagaagtggttctgc
aatggccgaggaaatacttctggcagccacattgtgaatcacctcgtgagggcaaaatgc
aaggaagtgacactacacaaggacgggcccctgggcgagaccgtgctggagtgctacaac
tgtggctgccgcaacgtcttcctgctgggcttcatccctgccaaggctgactctgtggtg
gtgctgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctccgagcaagagcagctgcgagcacggcagatcactgcacagcagatcaacaagctg
gaggagctctggaaggaaaatccttcagccaccctggaggacctagagaagcccggcgtg
gatgaggagccacagcacgtgcttctgcggtacgaggatgcttaccagtaccagaacatc
ttcgggccgctggtcaagctggaggctgactatgacaagaagttgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggggacctggcacccctgtgg
aagggcattggccacgtcatcaaggttcctgataattatggtgatgagatcgctattgag
ctccgcagcagcgtgggtgcccccgtggaagtgacccacaacttccaagtggattttgtg
tggaagtcaacctcttttgataggatgcagagtgcactgaagaccttcgctgtggacgag
acctctgtgtcagggtatatttaccacaagctgctgggccacgaggtagaggatgtggtc
atcaagtgccagctgccaaagcgcttcacggctcaggggctccccgacctcaaccactct
caggtgtatgctgtgaagaccgtgctgcagagaccactcagcctcatccagggtcctcca
ggcacaggcaagaccgtgacgtcagccacgattgtctaccaccttgctcggcagggcaat
gggcctgtgctggtctgtgctccaagtaacatcgccgtggaccagctcacagagaagatc
caccagacaggactgaaggtcgtacgcctctgtgccaagagccgtgaggccattgactcc
ccagtgtccttcttggctttgcacaaccagatcaggaacatggacagcatgccggagctg
cagaagctgcagcagctgaaggatgagacaggcgagctgtcgtctgcagatgagaagcgg
taccgggcgctcaagcgtacagctgagagagaacttctcatgaatgcagatgtcatctgc
tgcacgtgtgtgggtgctggtgacccgaggctggccaagatgcagttccgttccatcctc
attgacgagagcacccaggccactgagcctgagtgcatggtgcccgtggtcctcggggcc
aagcagctgatccttgtgggtgaccactgccagctgggcccagtggtgatgtgcaagaag
gcagccaaggccgggctgtcacaatcactcttcgagcgcttggtggtgctgggcatccgg
cccatccgcctgcaggtgcagtaccgcatgcaccctgcactcagcgccttcccgtccaac
atcttctacgagggctcattgcagaacggtgtcactgcagcggatcgtgtcaagaaaggc
tttgatttccagtggccacagcctgacaagcccatgttcttctatgtgacacagggccag
gaggagattgccagctctggcacatcctacctcaacaggacggaggcagccaatgtggag
aagataactacgaagctgttgaaggcaggtgcaaagcctgaccagattggcatcatcacg
ccctacgagggccagcgctcctacttggtgcagtacatgcagttcagcggctccctgcac
acaaagctctaccaggaagtggagattgccagtgtagacgccttccagggccgggagaag
gacttcatcattctgtcctgcgtgcgtgccaatgaacaccagggtattgggttcctaaat
gatccccgccgtctcaatgtggctctcaccagagcgagatacggcgtgatcattgtgggc
aacccaaaggcgctgtcgaagcagcccctgtggaaccacctactgagctactacaaggag
cagaaggcgctagtggaggggccgctcaacaacctccgggagagcctcatgcagttcagc
aagcctcgtaaacttgtcaacactgttaacccgggggcccgcttcatgactactgccatg
tatgatgcccgtgaggccatcatccccggatctgtctatgaccgcagcagccagggccgg
ccctcgaacatgtacttccagacccatgaccagatcagcatgatcagcgcaggtcccagc
cacgtggcggccatgaacatccccatccccttcaacttggtcatgcctcccatgccgccg
cctgggtactttggacaggccaatgggccggctgccggtcggggcacccccaaaaccaag
actggccgtgggggccgccagaagaaccgctttgggcttcctgggcccagccagaccacc
cttcccaacagccaggccagccaggatgtggcctcacagcccttttctcagggtgccctc
acacagggttatgtgtccatgagccagccctcccagatgagccagcctggcctctcccag
ccagaattgtcccaggacagctacctcggtgatgagtttaaatcacagattgacgtggca
ctctcacaagactccacataccagggagagcgggcataccagcacggcggggtcaccggg
ctgtcccagtactag
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integrated database retrieval system
