Arvicanthis niloticus (African grass rat): 117721417
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Entry
117721417 CDS
T08817
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04151
PI3K-Akt signaling pathway
anu04510
Focal adhesion
anu04512
ECM-receptor interaction
anu04820
Cytoskeleton in muscle cells
anu04926
Relaxin signaling pathway
anu04933
AGE-RAGE signaling pathway in diabetic complications
anu04974
Protein digestion and absorption
anu05146
Amoebiasis
anu05165
Human papillomavirus infection
anu05200
Pathways in cancer
anu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117721417 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117721417 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117721417 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117721417 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
117721417 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
117721417 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117721417 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
117721417 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
117721417 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
117721417 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
117721417 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117721417 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117721417 (Col4a1)
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117721417 (Col4a1)
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117721417 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117721417
NCBI-ProteinID:
XP_034375902
LinkDB
All DBs
Position
16:complement(6008835..6128311)
Genome browser
AA seq
1669 aa
AA seq
DB search
MGPRLSVWLLLLLAALLLHEERSRAAAKGDCGGSGCGKCDCHGVKGQKGERGFPGLQGVI
GFPGMQGPEGPHGPPGQKGDAGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGFPGI
PGMPGSPGLPGLQGPVGPPGLNGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGEQGVSGPP
GVPGQAQVKEKGDFAPTGEKGQKGEPGVPGIPGYGEKGEPGKQGPRGKPGKDGEKGEKGS
PGFPGDSGYPGLPGRQGPQGEKGEAGLPGPPGTVVGARPLGEKGERGYPGAPGLRGEPGP
KGFPGSPGQPGPPGFTIPGQVGAPGFPGERGEKGDQGFPGVSLPGPSGRDGTPGPPGPPG
PPGQPGHTNGIVECQPGPPGDQGPPGTPGQPGLTGEVGQKGQKGESCLACDTEGLQGPPG
PQGPPGEIGFPGQPGAKGDRGPPGRDGLEGLPGPQGSPGLIGQPGAKGEPGEIFFDMRLK
GDKGDPGFPGQPGMPGRAGTPGRDGHPGLPGPKGSPGSIGLKGERGPPGGVGFPGSRGDT
GPPGPPGVGPIGPIGEKGQAGFPGSPGSPGLPGPKGEAGKVVPLPGPPGASGLPGSPGFP
GPQGDRGFPGAPGRQGIPGEKGAVGQPGIGFPGPPGPKGVDGLPGEIGRPGSPGRPGFNG
LPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTGPPGLQGI
RGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGIPGQQGTPGVPGLPGSKGEMGVMGTPGQPGSPGPAGTPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLTGIPGSPGLPGPKGSVGGMGLPG
SPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPGRPGDKGDQGLAGFPGSPGE
KGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGT
PGPTGPAGQKGEPGSDGIPGSAGEKGEQGLPGRGFPGFPGTKGDKGSKGEVGFPGLAGSP
GIPGAKGEQGFMGPPGPQGQPGSPGIPGHPVEGPKGDRGPQGQPGLPGHPGPMGPPGFPG
LDGPKGDKGNPGWPGAPGLPGPKGDPGFQGMPGIGGSPGITGSKGDMGLPGVPGFQGQKG
LPGLQGVKGDQGDQGVPGPKGLQGPPGPPGPYDVIKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcagcgtctggcttctgctgctgctcgccgctcttctgctccacgag
gagcgcagccgagccgctgcgaagggtgattgtggtggttctggctgtggaaaatgtgac
tgtcatggcgtgaagggacaaaagggagaaagaggatttccagggttacaaggggtcatt
ggatttcctgggatgcaaggacccgagggcccacatggaccaccaggacaaaagggtgat
gctggagaacctggacttcctggcacaaaagggacaagaggaccccctggagcagctggc
taccctgggaatcccggacttcctggtattcctggccaagatggtcctccaggtcctcca
ggtatcccaggatgcaacggcacaaagggagagagagggccgctcggtcctcccggcttg
cctggattcagcgggaatcctggaccaccagggttaccaggaatgaagggagatcctggt
gaaattctcggccacattcctggaacactgctgaaaggggagagaggattccctggtatc
cctgggatgccgggctcaccagggttgccaggactccagggacctgtcggtcctccggga
cttaatggaccaccgggtcctccaggccctcctggacctcctggagaaaaggggcagatg
ggctccagcttccaaggaccgaaaggtgacaagggagaacaaggagtcagtggtccccca
ggagtacctggacaagcacaagttaaggaaaaaggagactttgccccaacaggagagaag
ggtcagaaaggtgaacctggagtcccgggaataccaggatatggagagaaaggtgaacct
ggcaagcaagggcctcggggaaaacctggaaaagacggtgagaaaggagaaaaggggagc
ccaggctttcctggtgattccgggtacccaggtctcccaggccggcagggccctcaggga
gagaagggtgaagctggacttccaggcccccctggaaccgtggtaggtgccaggcctttg
ggagagaaaggagagcgaggttacccaggagcaccagggttaagaggagagcccggccct
aaaggtttccctggatcaccaggccaaccaggccctccaggtttcactattccaggccag
gttggtgctccaggcttcccaggtgaaagaggagaaaaaggtgaccagggatttccaggc
gtgtctttaccaggaccaagtggaagagatggaaccccagggcctcctggccctcctggc
ccccctgggcaaccaggccacacaaatggcattgtggagtgtcaacctggaccacctggg
gatcagggtcctcctgggactccaggacagccaggtttgacaggcgaagttggacagaaa
ggtcagaaaggagagagctgccttgcctgtgacacagaaggacttcaaggccctccaggg
ccacaggggcctccgggagagattggtttccctggacagcctggggctaaaggtgaccga
ggcccacctggcagagatggtcttgaaggactgccgggtccacaaggttcaccagggctt
ataggccaacctggagctaagggggagcctggagagatattttttgacatgcgactcaaa
ggtgacaaaggagacccaggttttccaggacagcctggcatgccaggaagagcaggaact
cccggaagagatggccacccaggactccctggacccaaaggctccccgggttcaatagga
ttgaagggagaacgaggtcctcccggaggagttggcttccctggtagtcgtggagacact
gggcctcctggacccccaggagttggtcctattggtcccattggtgaaaaaggacaagca
ggctttcctggaagccccggctccccaggtcttccaggtccaaagggtgaagcaggaaag
gttgtcccactccctggtccccctggagcttcaggacttccaggatcccctgggttccca
gggccacaaggtgaccgaggcttcccaggagccccaggacggcaaggcatcccaggagag
aagggtgctgtgggccagccaggaatcggatttcctggacctcctggccccaaaggtgtt
gacggcttgccaggagagataggacgacctgggagtccaggtcgccctggatttaacggc
ttacctggcaacccaggaccacagggccaaaagggagaacctggcattgggctaccagga
ctcaaagggcagcccggccttccaggcattcctggtacacccggagagaagggcagcatt
ggaggaccaggtgttccaggagaacaggggttgactggcccccctggactccaggggatc
agaggtgacccaggacctcctggagttcaaggccctgcaggtccaccaggggttccagga
ataggaccacccggagctatgggccctcctggagggcaaggaccaccagggtcatcaggt
ccacctggagttaaaggagagaagggtttccctggattcccaggactggatatgcctggc
cccaaaggagataaaggctctcaaggacttcctggcctcacaggacagtcaggcctccct
ggcattcctggacagcaggggactcctggagtcccagggctcccaggttctaaaggcgaa
atgggagtgatgggaacccctggacaaccaggctcaccaggaccagcaggcaccccaggg
ttacctggagagaaaggggaccatggctttccaggctcctcaggacccaggggtgaccct
ggcttcaaaggtgataaaggtgatgttgggcttcctggcatgccaggatccatggagcac
gtggacatggggagtatgaagggacagaaaggagaccagggagagaaaggacaaattgga
cccactggtgacaaaggttcccgaggagaccctggaacaccaggagtgcctgggaaggat
gggcaggcaggccatcctggacagccaggacctaaaggtgacccaggccttactggaata
ccaggatcccctggactccctggacccaaaggatcagttggaggaatgggcttgccaggt
tcacctggagaaaaaggcgtgcccggcatcccaggctcacagggtgtccccggctcacct
ggagagaagggagccaaaggagagaaagggcagtcaggtctgcctggcattgggattccc
ggacggcctggtgacaagggagaccaggggcttgcaggcttcccagggagccctggtgag
aagggagagaaaggcagtgccggaaccccagggatgccagggtccccaggcccaagaggc
tctccagggaacattggccatccaggaagcccaggcctgcctggagagaaaggagacaaa
ggcctcccgggactggatggtgttcctggtgtcaaaggagaagcaggtctccctgggact
cctggccccacaggcccagctggccagaagggagagcctggcagtgatggaatccctggg
tcggcaggagaaaagggtgaacaaggtctaccaggaagaggcttcccaggcttcccaggc
accaaaggagacaaaggttccaagggtgaagtaggtttccctggtctagctggaagtcct
ggaattcctggagccaagggtgagcaaggattcatgggtcctcctggccctcaaggacaa
ccaggctctcctggcattcctggtcaccctgtggaggggcccaaaggagaccgaggacct
caaggtcaacctgggctgccaggacatccaggacctatgggaccaccagggttccctggg
ctcgatgggccaaaaggtgacaagggaaatccaggttggccaggagctcctgggcttcca
ggccctaaaggagacccaggattccaaggcatgccgggcattggcggctctccagggatc
acgggttcaaagggagatatgggactgcccggagttccaggattccaaggtcagaaaggt
cttcctggcctgcagggagtgaagggagatcagggagaccaaggtgtacccggccccaaa
ggtctccaaggtccccctgggcccccaggtccctacgatgtcatcaaaggagaaccaggg
ctccctggtcctgagggtccccctggtctaaaaggactccagggaccaccaggtccaaaa
ggacagcaaggtgtgacaggctcagtgggcttgcctggacctccaggtgtccctgggttt
gatggtgcccctggccagaaaggagagactggaccctttggaccacctggtccgagaggg
tttcctggtccaccaggccctgatgggctgccaggatccatgggtcccccaggcacccca
tctgtggaccatggcttccttgtgaccaggcatagtcagacaacagatgacccactgtgt
cctccagggaccaagattctttaccatgggtactctctgctctatgtccaaggcaatgaa
cgggcccacgggcaggacttgggtacggctggcagctgtctgcgcaagttcagcacaatg
cccttcctcttctgcaacatcaacaacgtctgcaacttcgcctccaggaacgattactcc
tactggctgtccacgccagagcccatgcccatgtctatggcacccatctctggggacaac
atccggcccttcattagcaggtgtgcagtttgcgaagcgcccgccatggtgatggcggta
cacagtcagaccattcagatccctcagtgccccaacggttggtcctcactatggattggc
tattccttcgtgatgcacaccagcgccggcgctgagggttctggccaagcccttgcatcc
cctgggtcctgtctggaagagtttagaagtgccccattcatcgagtgccatggcagaggg
acgtgcaattactacgcaaatgcttacagcttttggctcgctaccatagagagaagcgag
atgttcaagaagcccacaccgtccaccttgaaggcaggggagctgcgcacacacgtcagc
cgctgccaagtgtgcatgagaagaacataa
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