KEGG   Arvicanthis niloticus (African grass rat): 117721459
Entry
117721459         CDS       T08817                                 
Symbol
Copa
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
anu  Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:anu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:anu04131]
    117721459 (Copa)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:anu04147]
    117721459 (Copa)
Membrane trafficking [BR:anu04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    117721459 (Copa)
Exosome [BR:anu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117721459 (Copa)
  Exosomal proteins of bladder cancer cells
   117721459 (Copa)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 117721459
NCBI-ProteinID: XP_034376001
LinkDB
Position
16:62459336..62499853
AA seq 1224 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEAPEGLGEDALGKGQEEGGGWDVEEDLELPPELDVPSGVSG
GAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQFGPYKQLFL
QTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNAVPAVGLKLNDLIQRLQLCYQLTTVG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLCMEIERKKLPKETLDQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgctaaccaaattcgagaccaagagcgcgcgggtcaaaggccttagttttcatcctaaa
agaccctggatcctgaccagtttacacaatggggtcatccagttatgggactatcggatg
tgcaccctcattgacaaatttgatgaacatgatggtccagtgcgtggcattgacttccat
aagcagcagccactgtttgtctctggaggcgatgattataagattaaggtttggaattac
aaacttcggcgctgcctcttcacattgcttgggcacttggattatatccggacaaccttt
tttcatcatgaatatccttggattttgagcgcctcagatgatcagaccattcgggtgtgg
aactggcagtctagaacctgtgtctgtgtgttaacagggcacaaccattatgtaatgtgt
gctcaattccacccctctgaagacctggtggtatcagctagcctggaccagactgtccga
gtttgggatatttctggtctaaggaaaaaaaacttgtctcctggtgcggtggagtctgat
gtgagaggaataactggggttgatctgtttggaactacagatgcagtggtgaagcatgtg
ctagagggtcacgatcgtggagtaaactgggctgccttccacccaactatgccccttatt
gtatctggggcagacgaccggcaagtgaagatctggcgtatgaacgaatcaaaggcatgg
gaggttgacacctgccggggccattacaacaatgtgtcttgtgctgtctttcaccctcgc
caagagttgatcctcagcaattctgaggacaagagtattcgtgtctgggacatgtctaag
cggactggggttcagactttccgtagggatcatgatcgcttctgggtcctagctgcccat
cccaaccttaacctctttgcagcaggccatgatggtgggatgattgtatttaagctggaa
cgtgagcgtccagcctatgccgttcatggcaatatgctgcattatgtaaaggaccgattc
ctccgtcagctggatttcaatagctccaaagatgtagctgtgatgcagttacggagtggt
tctaagtttccagtgttcaatatgtcatacaatccagcagaaaacgccgtgctgctctgc
accagagcaagcaatctagagaatagtacctatgatctgtacaccatccccaaagatgca
gactcccagaatcctgatgcccctgaagggaaacgatcctcaggcctgacagcagtttgg
gttgctcggaatcggtttgctgtcctagatcgaatgcattcacttctgattaaaaacctg
aaaaatgaaatcaccaagaaaatccaggtacccaactgtgatgaaatcttctatgctggt
acaggcaacctcctgcttcgggatgcagattccatcacactctttgacgtccagcagaag
cgaactctggcatcagtgaaaatttccaaggtgaaatatgttatctggtcggcagacatg
tctcatgttgcactactggccaagcatgccattgtgatctgtaaccgcaagctggatgct
ctgtgtaacattcatgagaacattcgtgtcaagagtggggcctgggatgaaagtggggtg
tttatctataccacaagcaaccacatcaaatatgctgtcaccactggggaccatgggatt
atccgaactctggatttacccatctacgtcacaagagtgaagggcaataatgtatactgc
ctagacagggagtgtcgtcctcgggtgctcaccatcgatcccactgagttcaaattcaaa
ctggccttgatcaacaggaagtatgatgaggttctccacatggtgaggaacgccaaacta
gtaggccagtcaatcatcgcttatctccagaagaagggttatcctgaagtggcactgcat
tttgtaaaagatgagaaaactcgtttcagcttggccctggagtgtggaaacattgagatt
gctctagaggcagccaaagccctggatgacaagaactgctgggagaagctgggagaagtg
gccctgttacagggcaatcaccagattgtagagatgtgctatcagcgcaccaagaacttt
gacaaactttccttcttgtaccttatcactggcaacctggagaaactccgcaaaatgatg
aagattgctgagatccggaaggacatgagtggccattatcagaatgccctgtacctgggt
gatgtgtcagagagagttcgaatcctgaagaactgtggacagaaatccttggcctatctc
acagctgccacacacggcttagatgaagaagctgagagcctgaaggaaacgtttgaccct
gagaaggagacaatcccagacattgatcctaatgccaagctgctccagccacctgcccct
atcatgccattggataccaattggcccttattgactgtgtccaaagggttctttgaaggc
tccattgcaagcaaggggaagggaggagcattggctgctgacattgacatcgacactgtt
ggcactgaaggctggggagaggacgcagagctgcagctggatgaagatggctttgtggag
gccccagaaggtttgggagaggatgctcttggcaagggacaggaagaaggcggtggctgg
gatgtagaagaagatttggagctcccacctgagctggatgtaccctctggggtgtctggt
ggtgctgaagatgggttctttgtgcccccaaccaaaggaacaagcccaactcaaatctgg
tgcaataactcccagcttccagttgatcacatcctggcaggttcttttgaaacagccatg
cggcttctccatgaccaggtgggagtaatccagtttggcccctataagcaactgttccta
cagacatatgcccgaggccgcaccacctatcaagcgctgccctgcttgccctccatgtat
agttaccctaatcgcaattggaaggatgcagggctaaagaatgctgtaccagctgtgggc
ctaaagcttaatgacctgatccaacgattgcagctgtgctaccagctcaccacggttggc
aagtttgaggaagctgtggaaaaattccgttctattctactcagtgtgcctcttcttgtc
gtggacaataaacaggagattgcagaggcccagcagctcatcaccatctgccgggaatac
attgtgggtttgtgcatggagatagaaaggaagaagctacctaaggagaccctggaccag
cagaagcgcatctgtgagatggcagcctatttcacacactccaacctgcagcctgtgcac
atgatcctggtgcttcggacagccctcaaccttttcttcaagctcaagaacttcaagaca
gctgccacctttgcccgacgcctgctggaacttgggcccaagcctgaagtagcccaacag
acaagaaaaatcttgtctgcctgtgagaaaaaccccacagatgcctgccagctcaattat
gacatgcacaacccctttgacatatgtgctgcatcttaccggcccatctaccgtggcaaa
ccagtagagaagtgtccactcagtggggcttgctattcccctgagttcaaggggcaaatc
tgcagggtcactacagtgacggagattggcaaagatgtgattggtctgaggatcagtccc
cttcagtttcgctaa

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