Arvicanthis niloticus (African grass rat): 117721460
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Entry
117721460 CDS
T08817
Symbol
Ncstn
Name
(RefSeq) nicastrin
KO
K06171
nicastrin
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04330
Notch signaling pathway
anu05010
Alzheimer disease
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117721460 (Ncstn)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
117721460 (Ncstn)
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Motif
Pfam:
Nicastrin
Ncstrn_small
Peptidase_M28
Motif
Other DBs
NCBI-GeneID:
117721460
NCBI-ProteinID:
XP_034376002
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Position
16:complement(62443847..62459605)
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AA seq
708 aa
AA seq
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MATTRDGSGSDPGSRGLLLLSFSVVLTGLCGGNSVERKIYIPLNKTAPCVRLLNATHQIG
CQSSISGDTGVIHVVEKEEDLKWVLMDGPNPPYMVLLEGKLFTRDIMEKLKGGTSRIAGL
AVTPAKPNSTSSFSPSVQCPNDGFGIYSNSYGPEFAHCRKTLWNELGNGLAYEDFSFPIF
LLEDENETKVIKQCYQDHNLGPNGSAPSFPLCAMQLFSHMHAVISTATCMRRSFIQSTFS
INPEIVCDPLSDYNVWSMLKPINTSGGLEPDVRVVVAATRLDSRSFFWNVAPGAESAVAS
FVTQLAAAEALHKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMENGKFPVRLENIDS
FVELGQVALRTSLDLWMHTDPMSQKNESVKNQVEDLLVTLEKSSAGVPEVVLRRPVQSQA
LPPSSLQRFLRARNISGVVLADHSGSFHNRYYQSIYDTAENINVTYPEWQSPEEDLNFVT
DTAKALANVATVLARALYKLAGGTNFTSSVQADPQTVTRLLYGFLVRANNSWFQSIFKHD
LRSYLDDGPLQHYIAVSSPTNTTYVVQYALANLTGKATNLTREQCQDPSKVPNESKDLYE
YSWVQGPWNPNKTERLPRCVRSTVRLARALSPAFELSQWSSTEYSTWAESRWKDIQARIF
LIASKELEFITLIVGFSILVFSLIVTYCINAKADVLFVTPREPGAVSY
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggctacgactagggacggctctgggtctgacccaggaagtcggggtcttcttcttctg
tctttttccgtcgtactgacaggattgtgtgggggaaactcagtggagaggaaaatctac
attcccttaaataaaacagctccttgtgtccgcctgctcaatgcaactcatcagattggc
tgccagtcatcaattagtggggatacaggagttatccacgtagtggagaaagaagaagac
ctgaagtgggtactgatggatggccccaaccccccttacatggttctgctggagggcaag
ctctttaccagagatataatggaaaagctgaaggggggaaccagtagaattgccggtctt
gctgtgactccagccaagcccaattcaacttcaagcttctctcctagtgtgcagtgccca
aatgatgggtttggtatttactccaactcctatgggccagagtttgcacactgcagaaaa
acattgtggaatgaactgggcaatggcttggcttatgaagactttagtttccccatcttt
cttcttgaagatgagaatgaaaccaaggtcatcaagcagtgctatcaagatcacaacctg
ggtccgaatggctctgcaccgagcttcccgttatgtgccatgcagctcttctcacacatg
cacgccgtcatcagcaccgccacctgcatgcgacgcagcttcatccagagcaccttcagt
atcaacccagaaatcgtctgtgaccccttatccgactacaacgtatggagcatgcttaag
cctataaatacatctggaggattagaacctgatgtcagggttgtggttgcggctacacgg
ctggatagccggtcttttttctggaatgtggccccaggggcagaaagtgctgtagcctcc
tttgtcactcagctggctgcagctgaagctttacacaaggcacctgatgtcaccacccta
cctcgaaatgtgatgtttgtcttcttccagggggaaactttcgactacattggcagctca
cggatggtctatgatatggagaacggcaagttccctgtacggctagagaacattgactca
tttgtggagctggggcaggtggccctaagaacttcactagatctctggatgcacacagat
cccatgtctcagaaaaacgaatctgtgaagaaccaggtggaggaccttctggtcactctg
gaaaagagcagtgctggtgtccctgaagttgtcctgaggagaccagtccagtcccaggcc
cttccaccgtcgtctctacaacgatttcttcgggctcgaaacatctctggcgtagtcctg
gctgaccactctggttccttccacaatcggtattaccagagcatttatgacactgctgag
aacattaacgtgacctatcctgagtggcagagcccagaagaggacctcaactttgtgaca
gacactgccaaggcgctggcgaatgtggccacagtgctggcacgtgcgctctacaagctt
gcgggaggaaccaacttcaccagctccgttcaggccgatccccagacagttacacgtctg
ctctatgggttcctggtcagagctaacaactcttggtttcagtctatcttcaaacatgat
ctaaggtcctatctggatgatggacctcttcagcactacatcgctgtctccagccctacc
aacacgacttacgttgtgcagtacgccttggcaaacctgactggcaaggcgaccaacctc
acccgagaacagtgccaggatccaagtaaagtcccaaatgaaagcaaggatttatatgaa
tactcgtgggtacaaggcccttggaatcccaacaagacagagcggctcccacggtgtgtg
cgctctacggtacgactggctagggccttgtcccctgcctttgaactgagtcagtggagc
tccacggaatattctacgtgggccgagagccgctggaaagacatccaagctcggatattc
ctaattgccagcaaagaacttgagttcatcacgctgattgtgggcttcagcatcctcgtc
ttctctctcatcgtcacttactgcatcaatgccaaagccgatgtcctttttgttaccccc
cgagagcctggagctgtgtcttactga
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