Arvicanthis niloticus (African grass rat): 117721606
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Entry
117721606 CDS
T08817
Symbol
Lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117721606 (Lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117721606 (Lsm1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117721606 (Lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
117721606 (Lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117721606
NCBI-ProteinID:
XP_034376292
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All DBs
Position
16:17880928..17897110
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQARLEAEKLKVQTLKDR
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactatatgcccggcaccgccagcctcatcgaggacatcgacaaaaagcacttggtc
ctacttcgagatggaaggacacttatagggtttttaagaagcattgatcagtttgctaac
ttagtgctccatcagactgtggagcgaattcatgtgggcaaaaagtacggtgatattcct
cgagggattttcgtggtcagaggagaaaatgtggtcctactaggagaaatagacttggag
aaggagagtgacacgccccttcagcaagtgtctattgaagagatcctagaagagcagaga
gtagaacagcaggccagactggaggcagagaagctgaaggttcagacccttaaagatcgt
ggtctctccattcctcgcgcagacactctggatgagtactga
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