Arvicanthis niloticus (African grass rat): 117721611
Help
Entry
117721611 CDS
T08817
Symbol
Nwd1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117721611 (Nwd1)
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
117721611 (Nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
EIF3I
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
NBCH_WD40
NACHT
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
Beta-prop_LRRK2
KNTC1_N
Beta-prop_DCAF4
Beta-prop_SCAP
AAA_16
Beta-prop_TEP1_C
NPHP3_N
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
AAA_22
Beta-prop_Vps41
CNH
AAA
Beta-prop_EIPR1
Beta-prop_DCAF12
RNA_helicase
ATPase_2
CFAP43_N
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
AAA_28
RuvB_N
nSTAND3
DUF4062
AAA_25
WD40_like
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
117721611
NCBI-ProteinID:
XP_034376297
LinkDB
All DBs
Position
16:61316802..61373111
Genome browser
AA seq
1563 aa
AA seq
DB search
MDTEREALQCTAYPEVQSFCQRHGLAFEVVDLRWGIPNTQATDYLTTELCLEELERCQKT
SIGPAFVALLGDQYGPCPVPRRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTIPPTY
VLQPPGTPVVPGPEEATLTSVLRGGAQEAWRLGLISQEQWMCYQRSVIEWEIERGLLNSA
RGDQGATVFLRDVQDLSKHILDDCSLKMVDRLADGCLDTNAQSLLSGLKGRILDAQPGAL
KSHHVPWSRDLVNPKNKAHARYLKQLSEQFVARTNHQVLEQLRELELGRQELGWLYQEIR
HHLWQSTESTKVFCGHQELLAQLGRRLRQDESRTHTPLVLFGPPGIGKTTLMCKLAQQVP
GLLGHKTVAVLRLLGTSKLSLDARSLLRSLSFQLCLAYGLPLPPAQVLEAHSRVGHFFHT
LLHTVSQRNFESLVLLLDSVDDLDSRRHSPRVFWLPLKCPPRVHLIISICSGQEVLHNLQ
QTLKDPSAYWEVKALSGSQGQEFIQLLLAAEKRMLSPDQRDVLWASLPECGHPGRLRLAF
EEARKWASFTVPVPLATTAEEATHQLCIRLEETHGQLLVAHVLGYIVSSRYGLSEAELKD
VLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLEHCLVRRPVDGCMLLAIAHRQL
SQVIQVRYLSGPERAKRHVVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFS
GTVANRRKLTELPFHLLHAGRLEELKQEVLGNMSWISCQGISGGIEDLLDDFDMCSPHMD
SPEVELVREAIELCRPAVELRGLEKSVLYTELLARLLFFATSHPAIIGQLCQQAQSWFRT
CPYPMLVPLAGFLQPPGGPLQATLTGCHKGITAVAWSLEEKLLVVGTQDGAVVVWDVEEQ
QVVHVLMGHTAEVRCMRVFAQGTLVISASKDHTLRLWSLLSGQEKVTILDGGSPNPTEPQ
SWDLHVDEINNFVYSTSGAKINVWNLETSKLVFCITGDASDPWVYVALLAAQGLLLALSK
GGQVSLWTSATGKLQEKHQLSSIREETPTCAVSIQTWARLVAGFSSGSIALVSAGEDRLL
EKLPEAVGFLVVSEDDSLLAAGFGRSVRIFLADSQSFHRFMATDLEHEDVVETAVLGPEN
NLIITGSRDALIQVWSLSEQGTLLNVLEGMGTPASLLVRGGTLVVSASWKSSSFKVWDLR
STQKLQSPTPFLDRTGLAAVSHHGSYVYFPKVGDKNKVTIWDLAEGEEQDSLDTSNEVRC
LEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSEGRLAIAYDN
IVLVLDISPGDPCPVIEGPTYTFYTQLPETIASVAVLGDYRVVYGMNNGSLFLYDCVRSK
VFPLEAHGSRVSCVEVSHAEQLAVSGAEDALLCLWDLQACRGTLEMSYESSYRRGVRCAC
FSRDDKHVFAGMEDHSITVWSTLDGTLLAVQFVHAVVNRIIPTSNGFMAPTSHGYLIRER
FQCPSARVSQQDPLKNFKKAVWLVKTRQREELAAAEAPQDAEPVAIDGKESKSNKRSQVC
LIL
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atggacacagagcgagaagccctgcagtgcacagcctaccctgaggttcagagtttctgc
cagaggcacggcttggcattcgaggtggttgatctgaggtggggtattccgaacacacag
gccactgactacttgaccacagaactctgcttagaagaactggagcgttgtcagaaaacg
tccataggaccagcttttgtggccctcctgggtgaccagtatggcccctgcccggttcca
cggaggattgaggagaaggagtgggaggcactaagggctcagctgacctccaggccccga
gatctggagctggtgaccagacatttccagagagacgacaacaccattcctcccacctac
gtcttgcagcctccaggaacgccggtggtcccagggccagaggaggccaccttaacctct
gtcctgagaggtggagcccaagaggcctggcggctaggcctcatcagccaggagcaatgg
atgtgctaccaacgatcagtcattgagtgggagatcgagcgtggcctactgaactcagca
cgaggagaccagggagctaccgtcttcctgagagatgtacaggacctcagtaaacacatc
ttggatgactgctctctgaagatggtggatcggctggcagatggctgcctggacaccaat
gcccagagtcttctcagtggtcttaaagggcgcatactggatgctcagcctggagcccta
aagtcccaccacgtgccctggagccgcgatctggtcaaccccaagaacaaggctcacgcc
cgttacctgaagcaattgagtgaacagttcgtggccaggaccaaccatcaggtcctggag
cagctgcgagagctggagttgggcagacaggagctgggttggctctaccaagagatccgc
caccacctctggcagagcacagagtctaccaaggtcttctgtggccaccaggagctcctg
gcccagcttgggcggcggctcagacaggacgagagtcggacgcatactcccttggttctt
tttggaccaccaggcatcgggaagaccaccctcatgtgcaagctagcccaacaggtacca
gggctgcttggccacaagacggtggctgtcctaaggctgctggggacatcaaagctgagc
ctggatgcccgcagtctcctcaggagcctgtccttccagctgtgcttggcatatgggctg
ccattgcccccagcccaggtcctggaggcccacagcagggtgggccacttcttccacact
ctcctccacactgtgtcccagaggaacttcgagtccctggtgttactcctggactccgtg
gacgacctagattccagacgccattctccaagggtcttttggctgcccctcaagtgtcct
ccgagagtgcacctcatcatctctatatgctcaggccaggaggtgttacacaacctgcaa
cagaccctcaaggaccccagtgcctactgggaggtgaaggccctgtctggaagtcaaggc
caggagttcatccagctgctgctggctgcagagaagaggatgctgagcccagaccagaga
gatgtcctctgggccagcctcccagagtgtggccacccagggaggctaaggctggccttt
gaggaggcccggaagtgggcctccttcactgtgccagtacctttggccactacagcagag
gaagccacacaccagctctgtatccgcctagaggagacacatgggcagctgttggtagct
catgtcttgggctatattgtatcttccaggtatggtctctcagaagcagagctgaaggat
gtgttgtctttggatgatgaagtcttgcaggctgtgtaccgggactggacgccacccagc
aaagagctactgcgcttcccccctctgctgtgggtgcggctccgccgggacctggaacac
tgcctggtcaggaggccggtggatggttgtatgctactggccatcgcacacagacagctg
tcccaggtaatccaagttcgatatctgtctgggcctgagagagccaagaggcatgtcgtg
ctagctgaattcttctctggagcctggagccaggggatcaagaaacttatcaccctgccg
cttgtggggaagcccctgaacctggaccgcaaggtggccccacagccactgtggttctca
ggcacagtggccaaccggaggaagctgactgaactgccctttcatctgctgcatgcaggc
cgcttggaggagttgaagcaggaggtgctggggaacatgagttggatctcctgtcagggc
atctctgggggcattgaggacctgcttgatgattttgacatgtgttcccctcacatggac
tctcctgaggtcgaattggtcagagaagccatcgagctgtgccgccctgccgtggagctc
cggggcctggagaagagtgtcctctacactgagctcctggccagactccttttctttgct
acatcacatccagcaataatcggacagctgtgccaacaagcccagagctggttccgtacc
tgcccctacccgatgctagtgcccctggcaggattcctgcagccgcctggtggacctctt
caagccactctcactggttgtcacaaaggcatcaccgccgtagcatggagcctggaggag
aaactcctggtggtgggcacccaggatggcgctgtggttgtgtgggacgtggaggaacaa
caggtggtccatgttctaatgggacacacagctgaagtaaggtgcatgcgggtgtttgcc
caagggactctggtcatctctgcatcaaaggaccataccctgcgtctgtggagtctgctc
tctggccaggaaaaagtcaccattttggatggagggtcaccaaatcccacagagccccag
agctgggaccttcatgtggatgagataaacaactttgtatactccacatctggtgcaaag
atcaacgtgtggaatctggagacttcgaagctggttttctgtatcacaggagatgcatct
gatccctgggtctatgtggctttgttggctgcccagggtttgctgcttgccctgtccaag
ggtggccaggtcagtctgtggacctctgccacgggaaaactgcaggagaaacaccagttg
tccagcatcagagaagagacacccacctgtgctgtctccatccagacctgggcaaggctg
gtggctggcttcagcagtggctccatcgccctggtctccgctggagaggacaggctgctg
gagaagctcccagaagctgtagggttcctggtggtttctgaagatgattcccttcttgca
gcaggcttcggaagatctgtgcggatttttttggctgactcgcaaagcttccaccggttc
atggctacggatctggaacacgaggacgtggtggagacagcagtcttgggtcccgagaac
aatctgatcatcacagggtcccgggatgcacttatccaggtgtggagtctgtcagaacag
gggaccttgctgaatgtccttgagggcatgggcacccctgcaagcctgctggtccggggt
ggaactctggtggtgtctgcgtcctggaaatcttcatctttcaaggtctgggatcttagg
tccactcagaagctgcagtcgccgactccatttctggaccgcacgggccttgctgcagtg
tcccaccatggcagctacgtctacttccctaaggttggggacaaaaacaaagtcacgatt
tgggacttggcagaaggtgaggagcaagattccctggacacatccaatgaggtccgctgt
ctggaggtggcggagcaggccaagctcctcttcacaggcctggtttctgggatcgtgctt
gtgttccccctgaactccaggcaagatgtgctatgcatccccccacctgaggcacgcaaa
gctgtcaactgcatgtctctgagcaagagtgagggtcggctggccattgcctacgacaac
attgtcctggtgcttgacatcagccctggggacccgtgtcctgtcattgaaggccccacc
tacaccttttacacccagctgccggagaccatagcgagtgtggctgtcctgggcgactac
cgtgtggtctatggcatgaacaacggcagcctcttcctgtacgactgtgtgcggtctaaa
gtgttccctctggaggcccatgggagcagggtgagctgtgtggaggtcagccacgcagag
cagctagcagtgagcggggctgaggacgcgttgctgtgcctctgggacctgcaagcttgc
aggggaacgctcgagatgagctacgagagctcctaccgcagaggggtgcggtgtgcttgc
ttctccagggatgacaagcatgtgtttgcaggcatggaggaccactccatcaccgtctgg
agcacgctggacggcacactcttggctgtccagtttgttcatgccgtggtcaaccgaatc
atccctacctccaacggcttcatggcccccacaagtcatggctatctcatccgtgagcgc
ttccagtgcccgtcagccagagtctcccagcaagaccctctcaagaacttcaagaaggca
gtgtggctggtcaagaccaggcagagggaagagctggctgcggcagaggccccccaggat
gcagaaccagtggccatagatggaaaggaatcaaaatcaaataaacgctcacaggtctgc
ctcatactctga
DBGET
integrated database retrieval system
