Arvicanthis niloticus (African grass rat): 117721713
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Entry
117721713 CDS
T08817
Symbol
Sox1
Name
(RefSeq) transcription factor SOX-1 isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117721713 (Sox1)
Transcription factors [BR:
anu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117721713 (Sox1)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117721713
NCBI-ProteinID:
XP_034376404
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Position
16:7174771..7178810
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AA seq
392 aa
AA seq
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MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGGTKANQDRVKRPMNAFM
VWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYK
YRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGG
GYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPHAH
PHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGIPYGAAAAAAAAAGGAHQNSAVAA
AAAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAA
AAAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcacccacg
aacctctcgggcccggccggggcgggcgggggcggcggcgggggcgggggcggcggcggc
ggcggtgggggcaccaaggccaaccaggatcgggtcaagcggcccatgaacgccttcatg
gtgtggtcccgcggacagcggcgcaagatggcccaggagaaccccaagatgcacaactcg
gagatcagcaagcgcctgggggccgagtggaaggtcatgtccgaggccgagaagcggccg
ttcatcgacgaggccaagagactgcgcgcgctgcacatgaaggagcacccggattacaag
taccggccgcgccgcaagaccaagaccctgctgaagaaggacaagtactcgctggccggc
gggctgctggcggccggcgcaggtggcggcggcgcggccgtggccatgggcgtgggcgtg
ggcgtcggggcggcggccgtgggccagcgcctggagagcccgggcggcgcggcgggagga
ggctacgcgcatgtcaacggctgggctaacggcgcctaccccggctcggtggccgcggcg
gccgcggccgcggccatgatgcaggaggcacagctggcctacgggcagcacccaggcgcg
ggcggcgcgcacccgcacgcgcacccggcgcacccgcacccgcaccatccgcacgcgcat
cctcacaacccgcagcccatgcaccgctacgacatgggcgcgctgcagtacagccccatc
tccaactctcagggctacatgagcgcgtcgccttcgggctacggcggcatcccttacggt
gccgcggccgccgcagccgccgcagcgggcggcgcgcaccagaactcggcggtggcggcc
gcggcggctgcggcggccgcgtcgtcgggtgccctgggcgccctgggttctctggtcaag
tccgagccgagcggcagtccgccggccccggctcactcgcgggcgccgtgccccggggac
ctgcgcgagatgatcagcatgtacctgcccgccggcgagggtggcgatcccgcagcggct
gcggctgccgcggcccagagccggctgcactcgctgccacagcactaccagggcgcgggc
gcgggcgtcaacggcacggtgcccctgactcacatctag
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