Arvicanthis niloticus (African grass rat): 117721993
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Entry
117721993 CDS
T08817
Symbol
Lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117721993 (Lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
117721993 (Lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117721993 (Lsm4)
03041 Spliceosome [BR:
anu03041
]
117721993 (Lsm4)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117721993 (Lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
117721993 (Lsm4)
Spliceosome [BR:
anu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117721993 (Lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117721993
NCBI-ProteinID:
XP_034376796
LinkDB
All DBs
Position
16:complement(58810380..58828084)
Genome browser
AA seq
138 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQQKQQKGRGMGGAGRGVFGGRGRGGIP
GAGRGQPEKKPGRQAGKQ
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttgtcgctgctgaagacagcgcagaatcaccccatgctggtggagctgaag
aatggggagacgtacaacgggcacctggtgagctgtgacaactggatgaacatcaacctt
cgagaggtgatctgcacgtcgagggacggtgacaagttctggaggatgcccgagtgctac
atccgtggcagcaccatcaagtacctgcgcatccccgacgagatcatcgacatggtgcgg
gaggaggccgccaagggccgtgggcgaggaggaccgcagcagcagaagcagcagaaaggc
cgaggcatgggcggcgctggccgaggtgtgtttggtggccggggccggggtggcatccca
ggtgcaggccgaggccagccggagaagaagccagggcggcaggcaggcaagcagtga
DBGET
integrated database retrieval system
