Arvicanthis niloticus (African grass rat): 117722158
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Entry
117722158 CDS
T08817
Symbol
Col4a3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04151
PI3K-Akt signaling pathway
anu04510
Focal adhesion
anu04512
ECM-receptor interaction
anu04820
Cytoskeleton in muscle cells
anu04926
Relaxin signaling pathway
anu04933
AGE-RAGE signaling pathway in diabetic complications
anu04974
Protein digestion and absorption
anu05146
Amoebiasis
anu05165
Human papillomavirus infection
anu05200
Pathways in cancer
anu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117722158 (Col4a3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117722158 (Col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117722158 (Col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117722158 (Col4a3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
117722158 (Col4a3)
09154 Digestive system
04974 Protein digestion and absorption
117722158 (Col4a3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117722158 (Col4a3)
09162 Cancer: specific types
05222 Small cell lung cancer
117722158 (Col4a3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
117722158 (Col4a3)
09174 Infectious disease: parasitic
05146 Amoebiasis
117722158 (Col4a3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
117722158 (Col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117722158 (Col4a3)
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117722158 (Col4a3)
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117722158 (Col4a3)
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117722158 (Col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117722158
NCBI-ProteinID:
XP_034376945
LinkDB
All DBs
Position
17:complement(21488750..21612040)
Genome browser
AA seq
1670 aa
AA seq
DB search
MHSETALRFLALLLPILLLLLAAPPVVCKGCVCKGKGPCLCVGTKGEKGEKGFPGPPGSP
GQKGFPGPEGLPGPQGPKGFPGLPGLTGPKGIRGITGLPGFAGPPGLPGIPGHPGPRGLA
GLPGCNGSKGEQGFPGIPGTPGYAGPPGPDGLKGQKGEPARGEDGEFNGKGDPGPPGAPG
FQGFPGPPGFPGPAGPPGPPGFFGLPGAMGPRGPKGRMGDNMIGQKGERGVKGLTGPPGL
PGTVIFTLIRPYNKSDFKGEKGDKGESGEPGPPGPSGPPGDSYGSEKGAPGEPGPRGKPG
KDGAPGFPGTEGAKGNRGFPGLRGEDGFKGWKGDIGPPGFPGPTEYYDAYLKKGDKGMPG
PPGPKGARGPQGPSGPPGVPGSPGLSRPGLRGPTGWPGLKGSKGERGPPGKDTMGPPGPL
GCPGSPGPPGPPGPPGLPGDIVFQPGPPGDRGAPGNTGPPGVPGDDGPKGEAGSPCTECH
CFPGPPGVPGSPGLDGVKGIPGGRGAPGMKGNPGSPGSAGLPGFAGFPGDQGHPGLKGDK
GDTPLPMGQVGDPGDPGIRGLPGRKGLNGIPGGPGAKGPPGPRGEPALSGRKGDQGLPGA
PGSPGSPGPAGPAGPPGYGPQGEPGPKGAQGVPGALGPPGEAGLKGEPSTSTPVLGPPGP
PGPPGQAGPRGLPGLPGPVGKCVPGLPGPDGEPGIPEVGFPGPPGPKGDQCFPGMKGSPG
CPGEMGKPGLPGRPGVPGAKGEPSVGRPGEPGKPGFPGERGSSGENGDIGLPGPPGLPGT
PGRDGPDGPPGDPGLSGPPGAKGLPGRCMPGPRGTQGLPGLNGLKGQPGRRGDTGPKGDP
GIPGMDRSGVPGEPGPPGAPGHPGEMGPPGQKGHRGPRGFQSLPGEKGEVGMMGYPGTTG
PPGLPGKPGSQGQKGSLGIPGIKGERGRPGAKGERGEKGEPGPSQAPHLKGDKGEPGLKG
FVGNPGEKGNRGNPGLPGPKGLEGLPGLPGPTGPRGDPGSSGNPGRPGPPGMPGSMGNMG
VPGPKGRKGTSGIPGPAGRPGLPGIHGPQGDKGEPGYSEGARPGPPGPKGDPGLPGDKGK
KGERGLPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGHKGFPGPPGSTGPSGP
PGLPGLPGPMGMRGDQGRDGIPGPPGQKGETGLLGGYPGPKGSPGVPGVKGDRGVPGFSG
LPGRKGDMGNVGPQGPPGATGLPGPPGLPGAIVPGQKGNRGLPGLRGNPGEPGPPGPPGP
IGKGIKGDKGFMGLPGPKGLPGTVGDMGPPGHPGAPGTPGLPGVRGDPGFPGFPGIKGEK
GNPGFLGPTGHPGPVGPKGPPGPRGKPGTLKVISLPGSPGPPGAAGQPGMKGDPGPLGPP
GIPGPCGPRGKPGKDGEPGTPGPAGEKGNKGSKGQQGPPGLDGLPGLKGKPGDRGTPATG
TRLRGFIFTRHSQTTANPSCPEGTQPLYSGFSLLFVQGNERAHGQDLGTLGSCLQRFTTM
PFLFCNINNVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPAMAIAI
HSQTTAIPPCPQGWVSLWKGFSFVMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGRG
TCNYYSNSYSFWLASLNPERMFRKPIPSTVKAGDLEKIISRCQVCMKKRH
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgcactcagagactgctctaaggttcttggcgctcctgctgcctattctgctgctgctc
ctggctgccccgcctgtggtttgcaagggctgtgtctgcaaaggcaaagggccatgcctc
tgcgtggggaccaaaggagagaagggggagaaaggctttcctgggccccctggatctcct
ggccagaaaggatttccaggacctgaaggtttgcctggaccacagggacccaagggcttc
ccaggacttccaggactcactggccccaaaggcatcaggggaataactggattaccaggg
tttgcaggtcctcctggacttccaggcatcccaggccaccctgggcctcgtgggctggct
ggtttaccaggctgcaatggttctaagggtgaacaaggattcccaggcattccaggcaca
ccaggctatgcaggacccccaggtcctgacggcttgaaaggacaaaagggtgaacctgct
cgaggagaagacggggaattcaatggaaaaggtgaccctgggcctccaggggctccgggc
ttccagggttttccaggacccccaggttttccagggcctgccggtccgccaggacctccg
ggattttttggtttgccaggagcaatgggacccagaggacccaaaggtcgcatgggcgat
aacatgataggacaaaaaggagaaaggggtgtgaaaggattaacaggacctcctgggctg
ccaggaacagtgatttttacactcatccgcccatacaacaaatcggacttcaagggagag
aaaggagataaaggagagagcggtgaacctggacctcctggaccatcggggccacctgga
gactcctatggatcagaaaagggcgcacctggagagcctggtcctcggggaaaacctgga
aaagatggtgcccctggcttccctggcactgagggagccaaaggcaacaggggctttcct
gggttgaggggtgaagacggctttaagggatggaaaggagacattggacccccaggattt
cctggtccaacagaatattatgatgcatacctgaaaaagggagataaaggaatgccaggc
ccacctgggcccaaaggagctcgtggcccacagggtccaagtggtccccctggagttcct
ggaagtcctggactgtcaaggcctgggctcagaggacccacgggatggccaggcttgaaa
gggagcaaaggggagagaggaccgcctggaaaagacactatgggccctcctggaccactg
ggatgtcctggctcaccaggtccaccaggcccaccaggacctccaggacttccaggtgac
attgtttttcagccaggtccacctggtgaccgtggagcgccaggcaatacaggaccccca
ggagttccaggagatgatggacccaaaggagaagcaggcagtccatgcaccgagtgccac
tgcttcccagggccccctggagtcccaggatctccaggattagatggtgtcaaaggaatc
ccaggaggacgaggcgcgcctggtatgaagggaaatccagggtccccaggaagtgcaggt
ctcccaggatttgcaggattcccaggtgaccaagggcatccaggacttaaaggggacaaa
ggggacacacctctacccatggggcaagtgggtgatccaggtgatcctggaatcagaggc
ctacctgggagaaaaggcctcaatggaattcctggaggtccaggagcgaaaggaccacca
ggacctaggggtgaaccggccctgagtggaaggaaaggggaccagggacttccaggagct
cctggatcccctggatccccgggacctgcaggaccagctggaccaccaggctatggacct
caaggagagccaggtccaaagggagcccaaggagtccctggagccctgggaccacccgga
gaagccggtcttaaaggagaacccagtacatcaactccagttctaggtcccccaggccct
ccagggccccctggtcaggctggccccagaggtctacctggtttgcctggacctgtggga
aaatgtgttcctggtcttcctggacctgatggtgaaccaggaattccggaagttggattc
ccagggcctccaggacctaagggagatcaatgtttcccaggaatgaaaggatcacctggt
tgccctggagaaatgggaaagcctggccttcctggaaggccaggtgtcccaggagccaag
ggagaaccatcagtaggcaggcctggggaaccaggaaaaccaggctttccaggagaaaga
ggcagttccggggaaaatggagatattggactccctgggcccccaggcctccctggaact
ccaggaagagatgggcctgatggtcctccaggagacccaggactgtctggaccacctgga
gcaaaaggactcccagggaggtgcatgccaggacccaggggcacccaaggacttccaggc
ttaaatggattaaaagggcaaccaggtagaagaggtgatactgggccaaagggagaccct
ggtatcccaggcatggacaggtctggagtccctggagagcctggaccaccaggagcacca
ggtcatccgggtgagatggggccacctggccaaaaaggacatcgaggacctcgaggattc
cagtcattaccaggtgagaaaggagaggttggaatgatgggctatcctggaactactggc
cctcccgggcttcctgggaaaccaggctcacaagggcagaaaggtagcctcggaatccca
ggaataaaaggagaaagaggacgcccgggagccaaaggcgaacgaggggagaagggagag
cctgggccttcccaagcaccacatttaaagggggacaaaggagagcctggacttaaagga
tttgtaggaaatccaggtgaaaaaggaaacagaggcaatccagggttaccaggtccaaaa
ggccttgagggattgcctgggctaccaggccctacaggccctagaggagatccggggagc
agtggaaatcctggaagaccaggaccaccaggcatgccaggaagcatggggaacatgggg
gtaccaggccctaaagggagaaaaggaacttcgggaattccaggtccagctggaagacca
ggccttcctggaatccatggtccccaaggagataagggggagccaggttattcagaaggt
gcaaggccaggaccaccaggacctaagggcgatccaggattgccaggtgacaaaggaaag
aaaggagaaagaggcctacctgggccacctggacagtcggggcctgctggacctgatgga
gcccctgggagtcctgggagtcctggccacccaggtaaaccaggtcctgctggtgatttg
ggtcttaaaggacacaaaggcttcccaggccctccaggaagcactggcccttcaggccct
ccaggacttccagggcttcctgggccaatgggtatgagaggtgaccaaggacgtgatgga
attcctggtcctccaggacaaaagggagaaacaggcttgctggggggctatccaggccca
aaagggagccctggtgtaccaggtgtcaaaggagacaggggagttccaggcttttctggc
cttcctggcaggaagggagacatggggaatgttggacctcaaggacccccaggcgccact
ggactcccaggaccaccaggtctacctggggcaattgtccctggccagaaaggaaacaga
ggtctcccaggcttaagaggaaatccaggtgagccaggtccccctggacctccaggacct
attggaaaaggcataaaaggtgacaaaggatttatgggcctacctggccccaaaggtctg
cctgggactgtaggggacatgggcccaccaggtcacccgggagcaccaggtacccccggt
cttcccggggtcagaggtgatccaggattccccggatttccaggcataaaaggtgagaag
ggtaatcctggatttcttgggccaactggacatccaggaccagttgggccaaaaggacca
ccaggtccacgtggaaaacctggcacacttaaggtcatctcccttccgggaagcccaggg
ccacctggtgcagctggacagccaggaatgaaaggagaccctggacccctgggaccacca
ggaattccaggaccctgtgggccaagaggtaaaccaggcaaggatggggaaccaggaact
ccaggaccagctggtgaaaagggcaacaagggctcaaaaggacagcaaggtccacctggt
ctggatggattgccaggtttaaagggaaagcctggagacaggggaacacctgccactggg
acaagacttcgaggcttcatcttcacccgacacagtcaaaccacggccaatccttcatgt
cctgaaggaacacagccactctacagtgggttttctcttctttttgtacaaggaaatgaa
cgcgcacatggacaagaccttggtactctgggcagctgcctgcagcgattcaccacaatg
ccattcttattctgtaacatcaacaatgtatgtaactttgcatcacggaatgattattca
tactggctgtcaacaccagctctgatgccaatggacatggctccaattactggcagagct
ctcgaaccctatattagcagatgcaccgtctgtgaaggtcccgcaatggccatagctatt
cacagtcaaactactgctatccctccatgtccccagggctgggtttctctctggaaaggt
ttttcctttgttatgttcacaagtgcaggctctgagggtgctggacaggcactcgcctca
cctggctcctgcctggaggaattccgagccagtccgtttatagaatgccatggacgagga
acatgtaactactactcgaactcctacagtttctggctggcttccctaaatccagaaaga
atgttcagaaaacctattccatcaactgtgaaagctggagacttagagaaaatcataagc
cgctgtcaggtgtgcatgaagaaaagacattga
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