Arvicanthis niloticus (African grass rat): 117722174
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Entry
117722174 CDS
T08817
Symbol
Sned1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1 isoform X1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117722174 (Sned1)
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
117722174 (Sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
NIDO
EGF_TEN
EGF_2
fn3
EGF_CA
cEGF
EGF_Teneurin
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
117722174
NCBI-ProteinID:
XP_034376974
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All DBs
Position
17:complement(12031361..12090438)
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AA seq
1403 aa
AA seq
DB search
MRRGAAWALLLAAALGLGARGVRAAVTLADFYPFGTKRGDAVTPKQDDGGSGLQPLSVPF
PFFGAEHSGLYVNNNGIISFLKEVSQFTPVAFPIAKDRCVVAAFWADVDNRRAGDVYYRE
ATDPAMLNRATEDIRRYFPELPDFSATWVFVATWYRVTFFGGSSSSPVNTFQTVLITDGR
FSFTIFNYESILWTTGTHASSGGNADGLGGIAAQAGFNAGDGHRYFNIPGSRTADMAEVE
TTTNVGVPGRWAFRIDDAQVRVGGCGHTTSVCLVLRPCLNGGKCIDDCVTGNPSYTCSCL
AGFTGRRCHLDVNECASHPCQNGGTCTHGVNSFSCQCPAGFQGPTCESAQSPCDNKVCQN
GGQCQAESSSAVCVCQAGYTGATCETDVDECSSDPCLNGGSCVDLVGNYSCICVEPFEGP
QCETGSYLVPSPCLSNPCQNGGTCVDADEGYVCECPEGFMGLDCRDRTLNDCDCRNGGRC
LGANTTLCQCPPGFFGLFCEFEVTATPCNMNTQCPDGGYCMEYGGSYLCVCHTDHNISHS
LPSPCDSDPCFNGGSCDAHEDSYTCECPRGFHGRHCEKARPHLCSSGPCRNGGTCKETGD
EYRCTCPYRFTGRHCEIGKPDSCASGPCHNGGTCFHYIGKYKCDCPPGFSGRHCEIAPSP
CFRSPCMNGGTCEDLGTDFSCHCQPGYTGHRCQAEVDCGHPEEVKHATMHFNGTHMGSVA
LYTCDPGFSLSTLSHMRVCQPQGVWSQPPQCIEVEECRSQPCLHGGSCQDLIAGYQCLCS
PGYEGVHCELETDECQAQPCRNGGSCRDLPRAFICQCPEGFVGIHCETEVDACASSPCQH
GGRCEDGGGAYLCVCPEGFFGYNCETVSDPCFSSPCGGRGYCLASNGSYSCTCKVGYTGK
DCTKELLPPTALRVERVEESGISISWSPPEGTMARQVLDGYAVTYASSDGSSRRTDFVDR
SRSSHQLRALAAGRAYNISVFSVKRNTNNKNDISRPAALLTRTRPRPIEDFEVTNISANA
ISVQWALHRIQHATVSRVRVSILYPEASEVQSTEVDRSVDHLTFGDLLPGRKYSVRLTTL
SGPGGAEYPTESLASAPLNVWTRPLPPANLTASRVTATSAHMVWDTPSPGISLEAYVINV
TTSQSTKSRYIPNGKLVSYTVRDLMPGRRYQLSVTAVQSTEQGQLHSEPAHLYIITSPRD
GTDRRWYQGGHHSRMLRNRPAPVRLPELRLLNDHSVPETPTQPPRFSELVDGRRRVSARF
GGLPSRAVTVRSQPTTPVPLKNTEAPEQVHLALQLPKNSSKDTESTPGSCSEDFCQNGGT
CVPGANAHSCDCRPGFKGRHCELACEKVPRPCTRLFSETKSFPVWEGDICHHVYKKVYKV
HQDVCFKERCQSTSVKKPKQETK
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcgccgcctgggcgctgctgctggctgcagccctggggctcggggcgcgc
ggggtgcgcgctgcggtgaccctcgccgatttctacccgttcggcacgaagcgcggcgac
gccgtcaccccgaagcaggacgacggcggctcagggctgcagcccctctcggtgcccttc
ccgttcttcggcgccgagcactccggactctatgtgaacaataatgggatcatctccttc
ctgaaggaagtttctcagttcacccccgtggccttccccatcgccaaagaccgctgtgtg
gtagcagccttctgggcagatgtggacaaccgacgtgcaggtgatgtctactaccgggag
gccactgacccagccatgctgaacagagccacggaggacatcagacggtactttcctgag
ctcccggacttctctgctacctgggtttttgtggccacctggtaccgtgtgaccttcttt
ggaggcagcagctcttcccccgttaacacattccaaacggtgctcatcaccgacggccgg
ttctccttcaccatcttcaactatgagtccatcttgtggaccacaggcacacacgccagc
agcgggggcaatgctgatggcttgggaggcatcgcagcccaggcaggtttcaacgcaggt
gatgggcaccgctacttcaacatccccgggtcgcgcacagcggacatggctgaagtggag
accaccaccaatgtgggcgtgcccgggcgctgggcgttcagaatcgatgatgcccaggtg
cgcgtggggggctgcggccatacaacctctgtgtgcctggtcctgcgtccatgcctcaat
ggtggcaagtgcattgatgactgtgtcacgggcaatccctcctacacctgttcctgtctc
gctggcttcacaggccgaagatgccacctggatgtgaacgagtgtgcttcccacccctgt
cagaatggtgggacctgcacccatggtgtcaacagcttcagttgtcagtgcccagccggc
ttccagggacccacctgtgaatcggcccagtctccatgtgacaacaaagtgtgtcaaaat
ggtggccagtgccaggcagagagcagctctgctgtatgtgtgtgtcaggctggatacact
ggggccacctgtgagacagatgtggatgaatgcagctctgacccatgcctgaacggggga
tcatgtgttgatcttgttggaaactacagctgtatctgtgtggaacccttcgagggacct
cagtgtgagacaggaagctacctggtgccttcgccctgcctctccaacccctgccagaac
gggggcacctgtgtggatgctgatgagggatacgtgtgcgaatgccctgaaggtttcatg
ggcttggactgcagagatagaaccctcaatgactgcgattgccggaacggaggcagatgc
ctgggtgccaacaccacactctgccagtgtcctccaggcttctttgggctcttctgtgaa
tttgaagtcacagccacgccctgcaacatgaacacgcagtgtccagacggaggctactgc
atggagtacggtggaagctatctgtgtgtctgccacacagaccacaacatcagccactct
ctgccatcaccctgcgactcagacccttgctttaatggaggttcctgtgatgcccacgag
gactcctacacgtgcgagtgtcctcgtggattccacggcaggcactgcgagaaagcccgg
ccacacctgtgcagttcagggccctgccggaatgggggcacatgcaaggagacaggcgat
gagtaccgctgcacctgcccttatcgattcactgggagacactgtgagattggaaagcca
gactcgtgtgcctctggcccctgtcataatggtggtacttgtttccactacattggcaaa
tacaagtgtgattgccctccaggcttctctggacggcactgtgagatagccccctcaccc
tgcttccggagcccatgtatgaatggcggtacctgtgaggatctaggaacagatttctcc
tgccactgccaaccagggtatacagggcaccggtgtcaggcagaagtggactgtggtcac
cctgaggaggtgaagcatgctaccatgcacttcaatggaacccacatgggctcagtggcc
ctgtacacatgtgaccccggcttcagcctgagtaccctcagccatatgcgtgtctgtcag
ccacaaggtgtctggagccagcctccccagtgcattgaagtagaagagtgccggtctcag
ccatgcctgcatggaggctcctgccaggacctcattgctggttaccagtgcctctgcagc
ccggggtatgaaggagtccactgtgagctagagacagatgagtgccaagcacagccctgc
agaaatggaggctcctgcagggacctccccagggctttcatctgccagtgccctgaaggt
tttgttggaatccactgtgaaacagaggtggatgcctgtgcctccagcccctgccagcac
ggaggccggtgtgaggacggaggtggggcctacctgtgcgtgtgtccagagggcttcttt
ggctacaactgtgagacagtgagtgacccctgcttctcgagcccctgtgggggccgcggc
tactgcttggccagcaacgggtcctacagctgtacctgcaaagtgggatacacaggcaag
gactgcaccaaagagctcctcccaccaacagccctcagggtagaaagggtagaagagagt
ggcatctccatctcctggagcccacctgagggcaccatggccagacaggtgctggatggc
tatgcagtcacctatgcctcctcggacggatcttcccggcgcacagacttcgtggaccgg
agtcgctcctctcaccagctccgggccctagcagccggccgtgcctacaacatctcggtt
ttctcagtcaagagaaacacaaacaacaaaaatgacatcagcaggcctgcagcactgctc
acccgcacccgaccccgccctattgaagactttgaggtcaccaacatttcagccaatgcc
atctccgtgcagtgggctcttcataggatccagcatgccactgtcagcagggttcgagtg
tccatcctctaccctgaggcctctgaggtccagtccactgaggtggacaggagtgtggac
cacctcacatttggggacctgctgccagggagaaaatacagtgtgcggctaaccaccctc
agtggacctggaggagctgaatatccaaccgagagcctggcctcagctcctctgaacgtg
tggaccaggcctttgcctccagcaaacctgactgcctctcgagtcaccgctacctctgcc
catatggtctgggacacccccagtccaggtatctcactggaggcttatgtcatcaatgtg
accaccagtcagagtaccaagagccgctacatccccaatgggaagctggtgtcctataca
gtgcgtgatctgatgccaggtcggcggtaccagctctcagttacagctgtgcagagcaca
gagcagggccagctgcacagtgagcctgcacacctctacatcatcacctcccccagggat
ggcaccgacagacgctggtaccagggaggacaccactcacggatgctcagaaatagacca
gcccctgtgcgcctgccagagctgcgcctgctcaatgaccacagtgtccctgaaacacca
actcagccgcccaggttctcagagcttgtagacggaagacgaagagtgagtgccaggttt
ggtggcttgcccagcagagcagtaactgtgagatcacaacccaccactccagtgccgctc
aagaacacagaggcccctgagcaggtccatctggccctccagctacccaagaacagcagc
aaggacacagaaagtacccctggcagctgttcagaagatttttgtcagaatggaggcacc
tgtgttccaggtgccaatgcccacagctgtgactgcaggcctgggttcaaaggcagacac
tgtgagcttgcctgtgaaaaagtgccccgcccctgcacaaggctgttctctgagaccaag
tcatttcctgtctgggaaggagacatctgccaccatgtgtataagaaagtctacaaagtt
caccaggacgtgtgctttaaggagcgctgccagagcacaagtgtcaagaaacccaaacag
gaaacaaagtaa
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