Arvicanthis niloticus (African grass rat): 117722205
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Entry
117722205 CDS
T08817
Symbol
Atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04136
Autophagy - other
anu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117722205 (Atg4b)
04136 Autophagy - other
117722205 (Atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
anu01002
]
117722205 (Atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117722205 (Atg4b)
03029 Mitochondrial biogenesis [BR:
anu03029
]
117722205 (Atg4b)
Peptidases and inhibitors [BR:
anu01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
117722205 (Atg4b)
Membrane trafficking [BR:
anu04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
117722205 (Atg4b)
Mitochondrial biogenesis [BR:
anu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117722205 (Atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
117722205
NCBI-ProteinID:
XP_034377043
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All DBs
Position
17:complement(11559598..11591201)
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AA seq
393 aa
AA seq
DB search
MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRNFPA
IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDNYLNVLNAFLDRKD
SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR
RLCRASLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYV
ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFH
CQHPPCRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPSHLA
CQDVLNLSLDSSDVERLERFFDSEDEDFEILSL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagccactttgacatatgatactctccggtttgctgaatttgaagattttcct
gagacctcagagcctgtctggattctgggcagaaaatacagcattttcacagagaaggac
gaaatcttgtctgatgttgcatccagactttggtttacatacaggagaaactttccagcc
attgggggaactggccctacttcagacacaggctggggttgcatgcttcggtgtggacag
atgatctttgctcaggccctggtatgccggcacttaggacgagattggagatggactcag
cggaagagacagcctgacaactacttgaatgtcctcaatgctttcctggacaggaaggac
agctactattccatccaccagatagcgcaaatgggagttggcgaaggcaagtctataggc
cagtggtacgggccgaacactgttgcccaggtcctcaagaaacttgctgtattcgacaca
tggagttccttggctgttcacatagcaatggacaacactgtggtgatggaggagatcaga
aggttatgcagggccagccttccctgtgctggggctgctgcacttcctactgattcggag
aggcactgtaatgggttccctgctggagctgaagtcaccaataggccatcggcttggaga
ccactagtgcttctcatccctctccgcctgggactgacagacatcaatgaggcctatgtg
gagaccctgaagcactgtttcatgatgccccagtccctgggcgttatcggagggaagccc
aacagtgcccactactttattggctatgttggtgaggagctcatctatctggacccccat
actacacagcctgcagtggagctgacggacagctgctttatccccgacgagagcttccac
tgccaacaccctccctgtaggatgggtattggagagcttgacccatccattgccgtggga
tttttctgtaagaccgaggaagactttaacgactggtgtcagcaagtcaaaaagctatcc
cagcttggtggtgcccttcccatgtttgagttggtggaacagcagccttcccatctggcc
tgccaggatgtcctgaacctgtccctagattcttctgatgtagagagactggagaggttc
tttgactctgaggatgaagactttgaaatcttatccctctga
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