Arvicanthis niloticus (African grass rat): 117722237
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Entry
117722237 CDS
T08817
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04136
Autophagy - other
anu04140
Autophagy - animal
anu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117722237 (Atg16l1)
04136 Autophagy - other
117722237 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117722237 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117722237 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
anu03029
]
117722237 (Atg16l1)
Membrane trafficking [BR:
anu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
117722237 (Atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
117722237 (Atg16l1)
Mitochondrial biogenesis [BR:
anu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117722237 (Atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_EIPR1
NBCH_WD40
eIF2A
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_SPT8
KASH_CCD
Beta-prop_Vps41
Fez1
APEH_N
Peptidase_M15_4
Img2
Motif
Other DBs
NCBI-GeneID:
117722237
NCBI-ProteinID:
XP_034377117
LinkDB
All DBs
Position
17:complement(17342052..17380248)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSALRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEK
HDIPNRHEISPGHDGAWNDSQLQEMAQLKMKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEIQMNEAKIAECLQTISDLETDCLDLRNKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDI
EVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSDAAR
RRSVSSIPVPQDIVDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDR
RVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDHRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRSESVVREMELVGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ
TFSAPGFKCGSDWTRVVFSPDGSYVAAGSADGSLYVWSVLTGKVEKVLSKQHSSSINAVA
WAPSGLHVVSVDKGSRAVLWAQP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggccctccgcgccgcagactttccccgctggaagcgtcacatcgcggaggaa
ctgaggcgccgggaccgattgcagaggcaggcgttcgaggagatcattctgcagtatacc
aagttgctggaaaagtcagatcttcattcagtattgacccagaaactacaagctgaaaag
catgacataccaaataggcatgaaataagtcctggacatgacggtgcatggaatgatagt
cagctacaagaaatggcccagctgaagatgaaacaccaagaagagctgactgaactgcat
aagaagcgtggcgagttagctcagttggtgattgacctgaataaccaaatgcagcagaag
gacaaggagatacagatgaatgaagcaaagattgcagagtgtttacagaccatctctgac
ctggagacagactgtctggacctgcgcaacaaactacaggaccttgaggtagccaaccag
accctgaaggatgagtatgatgccttgcagattacttttactgccctagaagagaaacta
aggaaaactactgaggagaaccaggaactggtcaccagatggatggctgagaaggcccaa
gaagctaatcgcctcaatgcagagaatgagaaggactccaggaggcgtcaagcacggctt
cagaaggagcttgcagaagcagcaaaggagcctctacctgttgaaccggatgatgacatt
gaagtcattgtggatgagacctcagatcacacagaagagacttctccagtacgagccatc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgaatctccccttttgggacatcattcttctgatgctgccagg
agacgctctgtctcttccatcccagttccccaggatattgtggacactcatcctgcttct
ggtaaagatgtgagagtcccaactactgcctcatatgtctttgatgcacatgacggagag
gtcaatgcagtgcagttcagtccaggctcccggttactggccactggaggcatggaccgc
agggttaaactttgggaagcattcggagataaatgtgaattcaagggttccctgtctggc
agtaatgcaggaattacaagcattgaatttgatagtgctggagcttacctattagcagct
tcaaatgattttgccagccggatctggactgtggatgatcaccgattaaggcacacactt
acaggccacagcgggaaagtcctctctgccaagttcctgctggacaatgcacggatagtc
tcaggaagtcacgaccggaccctcaaactctgggatctccgcagcaaagtctgtataaaa
acagtgtttgcaggatccagctgcaatgacattgtttgcactgagcaatgtgtaatgagt
ggacattttgacaagaaaattcgtttctgggatatccgatcggagagtgtggtccgagag
atggaactagtagggaagatcactgctctggacttaaaccctgagagaactgagctcctg
agctgctcccgtgacgacctgctaaaagtcattgacctccggacaaatgctgtcaagcag
acattcagtgcacctggattcaaatgtggctctgactggacccgggttgtcttcagccct
gatggcagttacgtggcagcaggctcagctgatggttctctttatgtctggagtgtgctc
acaggcaaagtggagaaggttctttcaaaacagcacagctcttctatcaatgcggtggcg
tgggccccctcgggcttacatgttgtcagtgtggacaaaggaagcagagctgtgctgtgg
gcacagccttga
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