Arvicanthis niloticus (African grass rat): 117722238
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Entry
117722238 CDS
T08817
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
anu03009
]
117722238 (Ighmbp2)
03012 Translation factors [BR:
anu03012
]
117722238 (Ighmbp2)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117722238 (Ighmbp2)
5.6.2.5 RNA 5'-3' helicase
117722238 (Ighmbp2)
Ribosome biogenesis [BR:
anu03009
]
Eukaryotic type
Other ribosome biogenesis factors
117722238 (Ighmbp2)
Translation factors [BR:
anu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117722238 (Ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
ResIII
zf-AN1
DEAD
nSTAND3
AAA_16
Helicase_RecD
UvrD-helicase
AAA_22
SLFN-g3_helicase
IstB_IS21
AAA_25
PhoH
Flavi_DEAD
AAA
Zot
DnaB_C
ABC_tran
UvrD_C_2
VWA_2
HSA
NPHP3_N
NTPase_1
ATPase
Motif
Other DBs
NCBI-GeneID:
117722238
NCBI-ProteinID:
XP_034377122
LinkDB
All DBs
Position
1:complement(111779973..111802924)
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AA seq
991 aa
AA seq
DB search
MASSTVERFVAQQLELLELERDAEVEERRSWQEHCSLKELQRRGVCLLKLQVSSQRTGLY
GQRLVTFEPRKFGPAAVLPSNSYTSGDIVGLYDTNESSQLATGVLTRITQKSVTVAFDES
HDFQLNLDRDNTYRLLKLANDVTYKRLKKALMTLKKYHSGPASALIDVLLGGSSPSPATE
IPSLTFYNTTLDPSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC
APSNIAVDNLVERLALCKKRILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRDID
QVFGKNKKTQDKREKSNFRNEMKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPL
KLLPEDYFDVVLVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAAMAGLSRS
LMERLAEKHGAAVVRMLTVQYRMHQAITCWASEAMYHGQLTAHPSVAGHLLKDLPGVADT
EETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVALHIQALVDAGVQAGDIAVIAPY
NLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAV
TRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYTHEGSQGHSC
APKSKCHTTSIRKPASNQESSQEAREAPRHGHGKASEKPLGSQVQTQYSSKANGSDRTGG
TDRTEHFRAMIEEFVASKEAQLEFPTSLSSHDRLRVHQLAEEFGLKHDSTGEGKARHITV
SRRSPARSGGVAPQPPSPPSPTQAEPEPQAEQPIGQPHGPTQLDLKALHLESLQRQQSDQ
ALTAKGQPGVGSRPQKAAQKKKKKEPKAPAMALPCEEDFDALVSAVVKADNTCSFSKCSA
STTTLGQFCMHCSRRYCLSHHLPEIHGCGEKARAHARQRISREGVLYAGSGTKDRALDPA
KRAQLQRRLDKKLGELSSQRTSKRKEKERGT
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtccacggtggagcgttttgtggcccagcagctagagctgctggagctggag
cgggacgccgaggtggaggagcgcaggtcctggcaggaacactgttctctgaaagagctt
cagagacgaggggtgtgcttgctgaagcttcaggtatccagccagcgcaccgggctgtat
ggacagcggctggtcaccttcgagcccaggaaatttgggcctgcagcggtgcttcccagc
aacagctacacttctggtgatatcgtgggtctgtatgatactaatgaaagcagccaactg
gccactggggtcctgacccgcatcacccaaaaatcagtcacagtggcctttgatgagtcc
catgatttccagttgaacctggacagagacaatacctacaggctgctgaagcttgccaat
gatgtcacctacaaacgcctgaaaaaagcactgatgacactgaagaagtaccactctggg
ccagcatctgcactcatagatgtcctgttgggtggctctagccccagtcctgccactgaa
ataccctcactcactttctacaacacaaccctggacccttcccagaaagaagctgtgtcc
tttgcactggcccagaaagaacttgccatcatccacgggccgcctggcacgggtaaaacc
acaactgtggtggaaataatccttcaagctgtgaagcaaggcttaaaggttctgtgctgt
gctccctccaacatcgctgtggacaacctggtggagcgtctggctctgtgcaagaagcgg
attctgcgactgggtcaccctgcccgcctcctggagtccgttcagcagcactcactggac
gcagtgctagcacgcagtgacaatgcccagattgttgctgacatcagaagggacattgac
caggtctttggcaagaacaaaaagacccaggataagagagaaaaaagtaattttcgaaat
gaaatgaagctgctaaggaaggaactgaaggagagggaagaagcagccatagtccagagc
ctcactgctgcagacgtggtcctagccaccaacacaggtgcgtcttctgatggccctctg
aagctgctgcctgaggactactttgatgtggtgctggtggacgagtgtgcccaggcccta
gaagccagctgctggatccccctgctgaaggccccaaagtgtatcctagctggagaccac
aaacagctgccacctaccactgtctctcacaaggcagcaatggctgggctgtcccgcagc
ctgatggagcggctggcagagaagcacggtgctgccgtggtgaggatgctgacagtgcag
taccgaatgcaccaggccatcacgtgctgggcctcggaggccatgtaccacgggcagctt
accgcccatccctctgtggcaggacacctcctgaaagatctcccaggtgtggctgacaca
gaggagacaagtgtccccctgctgctcatagacacagctggctgtgggctgctggaactg
gaggaggaggacagccagtccaagggaaacccaggcgaagttcgcctcgttgctctgcac
atccaggctctggtggatgctggggtccaggcaggtgacattgccgtcatcgcaccctac
aaccttcaggtggatctgctcagacagagcctctctaacaagcaccctgagctggagatt
aagtctgttgatggctttcaaggccgcgagaaggaggctgtgatcctgacctttgtcagg
tccaacaggaaaggtgaagttggttttctggctgaggacaggcggatcaatgtcgctgtt
acccgtgctcggcggcacgtggcagtcatctgtgattcccgcactgtcaacaaccatgcc
tttttgaagaccttggtggattatttcacagagcatggggaggtccgcacagcctttgag
tacctggatgacatcgtccctgagaactacacccatgagggctcccagggccacagctgt
gcccccaaatccaagtgccacaccacctccatcaggaagcctgccagtaatcaggagagt
agccaagaggccagagaagcccctagacatggccacgggaaggcgagtgagaaacctctg
ggctctcaagtccagacccagtacagctccaaggcaaatggctctgacagaactggaggc
acagaccggacagagcactttagggctatgattgaggagtttgtggccagcaaggaggcc
cagttggagtttcccacatccctgagctcccatgacaggctgcgagtccaccagttagct
gaagagttcgggctgaagcacgacagcaccggggaggggaaggcacggcacatcacagtg
agcaggaggagccctgcccgttctggcggtgtggccccacagcctccctcaccgcccagc
cccacacaggctgagcctgagccacaggcagaacagcccattgggcagccgcatggcccc
acacagctggatctgaaggcattgcacctggagagtctgcagcggcagcaaagcgaccag
gccctgacagccaagggacagccgggtgtgggctcgaggccacagaaggctgcacagaag
aaaaagaagaaagaaccaaaagctccagccatggctctgccctgtgaggaggacttcgat
gccctagtgtctgctgtggtgaaggctgacaacacctgtagcttctccaagtgctctgcc
agcaccaccactctgggccagttctgcatgcactgtagccgccgctactgcctcagccac
catctgcctgagatccatggctgtggtgagaaggctcgcgcccacgccagacagagaatt
agccgggaaggagtgctctatgcaggcagtgggaccaaggacagggccctggacccggcc
aagagggcgcagctacagaggaggctggacaagaagctgggcgagctcagcagtcagagg
acgagcaagaggaaggagaaggagagggggacatga
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