Arvicanthis niloticus (African grass rat): 117722947
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Entry
117722947 CDS
T08817
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117722947 (Sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117722947 (Sf3b3)
03041 Spliceosome [BR:
anu03041
]
117722947 (Sf3b3)
03036 Chromosome and associated proteins [BR:
anu03036
]
117722947 (Sf3b3)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117722947 (Sf3b3)
Spliceosome [BR:
anu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117722947 (Sf3b3)
Complex B
117722947 (Sf3b3)
Complex C
U2 SnRNP specific factors
117722947 (Sf3b3)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117722947 (Sf3b3)
TFTC complex
117722947 (Sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
117722947
NCBI-ProteinID:
XP_034378142
LinkDB
All DBs
Position
18:complement(36825256..36863521)
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacttgaccttacagcgggccactggcatcagctttgccatccatggc
aacttctctggaaccaaacaacaggaaattgttgtttcccgtgggaagattttggagtta
cttcgaccagatcctaacactggcaaagtacataccctcctcactgttgaagtatttggt
gttatccggtcacttatggcatttaggctaacaggtggcaccaaagactacattgtagtt
ggcagtgactcaggccgaattgttatcttggaataccagccgtcaaagaatatgtttgag
aaaattcatcaagaaacttttggcaaaagcggatgtcgccgtattgttcctggccagttc
ttagctgtggatcccaaaggaagagctgttatgattagtgcaattgagaagcagaagttg
gtatatatcttgaacagagacgctgcagcccgacttaccatttcatctcccctggaggcc
cacaaagcaaacactctagtgtatcatgtggttggagtagatgtgggatttgaaaatcct
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaactggggaagca
gcagccaatacccagcagacgcttactttctatgaattggaccttggtttaaatcatgtg
gttcggaaatacagtgaacccttggaggaacatggcaacttccttattacagttcctgga
gggtcagatggtccaagtggagtgctgatctgctctgagaattatatcacctacaagaac
tttggtgaccagccagacatccgatgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtttgctctgccacccataagaccaagtccatgttcttc
tttttggctcaaacggagcagggagatatctttaagatcactttggagacagatgaagat
atggtaactgagatccgcctcaagtattttgatactgtgcctgttgctgctgctatgtgt
gtgcttaaaacaggcttcctttttgtggcatcagaatttggaaatcattatttatatcaa
attgcccatcttggagatgatgatgaagagcctgagttttcgtctgccatgcctctagaa
gaaggagatacattcttctttcagccaagaccactcaaaaatcttgtgctggtggatgaa
ctggacagcctctctcctattctgttttgccagatagctgatttggctaatgaagacact
ccacagctgtatgtagcctgtggcaggggaccccggtcatctttgagagtcttaaggcat
ggacttgaggtgtcggaaatggctgtttctgagctccctggtaaccccaatgctgtctgg
acagtccgtcggcacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gccacactcgtgctatctatcggagagactgtggaagaagtgactgactctgggttcttg
ggtaccactccaaccttgtcctgctccttactaggagatgatgcattggtgcaggtgtat
ccagatggcattcgacacatacgagcagacaagagagtcaatgagtggaagactcctggc
aagaaaacaattgtgaagtgtgcagtgaaccagcgacaagtggtgatcgccctcactggg
ggagagctggtctatttcgagatggatccttcaggacagttgaatgagtacacggagcgg
aaagagatgtcagcagatgtggtgtgcatgagtctggccaacgtgccccctggagaacag
cgatctcggttcctggctgtgggcttggtggacaacactgtcagaatcatctcccttgat
ccatcagactgtttacagcctctgagtatgcaggctctcccagcccagcctgagtctcta
tgtattgtggaaatgggtgggaccgagaaacaagatgagctgggtgagaggggctctatt
ggcttcctgtacctgaacattggactacagaatggtgtactgctgagaactgtcctagac
cctgttactggggacctgtctgacactcgcactaggtatctggggtcccgtcctgtgaaa
ctcttccgggtccggatgcaaggccaggaggctgttctggctatgtctagtcgctcatgg
ctgagctactcttaccagtcccgcttccatctcacccctctgtcttacgagaccctggaa
tttgcatcgggctttgcctctgaacagtgtcctgaaggcattgttgccatctccaccaat
actttgagaattttggcattagagaagcttggtgctgtcttcaatcaagtagcctttcca
ttgcagtacacacccaggaagtttgtcatccaccctgagagtaacaaccttatcatcatt
gagacggatcacaatgcctacactgaggctacaaaagctcagagaaagcagcagatggct
gaggaaatggtagaagcagcaggggaggatgagcgggagctggctgcagaaatggcagca
gcattcctcaatgaaaaccttccagaatccatttttggagctcccaaggctggcaacggg
cagtgggcctctgtgattcgagtgatgaaccctatccaagggaacacactagaccttgtc
cagctggagcagaatgaagcagcctttagtgtggcagtctgtaggttctccaacactggt
gaagactggtatgtgctggtgggtgttgccaaggacttgatactgagccctcgatctgtg
gcagggggctttgtctatacgtacaagcttgtgaacaatggggaaaagttggagtttttg
cacaagactccagtggaagaggtccctgctgctattgccccattccaggggagggtactg
attggtgtggggaagcttttacgtgtctatgacctggggaagaagaagttacttcgaaag
tgtgaaaataagcatattgccaattacatatctgggatccagacaattggtcacagagta
atcgtatctgatgtccaagaaagcttcatctgggttcgatacaagcgaaacgagaaccag
ctcattatctttgctgatgacacctatcccagatgggtcaccactgccagccttctcgac
tatgatactgtggctggggcagacaagtttggcaacatttgtgtggtgaggctcccacct
aacaccaacgatgaggtggatgaagatcccaccggaaacaaagccctgtgggatcggggc
ttgctcaatggggcttcacagaaggcagaggtcatcatgaactaccacgttggtgagacg
gtgctgtccttacagaagaccacgctgatccctggaggctcagagtcccttgtctatacc
actttatctggaggaattggcatccttgtccctttcacatctcatgaggaccatgacttc
ttccagcatgttgaaatgcatctgcggtctgagcatccccctctttgtggacgggaccac
ctcagctttcggtcttattatttccctgttaagaatgtgattgatggagacctttgtgag
caattcaactccatggagcctaacaagcagaagaatgtctctgaagagctggaccggacc
ccacctgaggtgtccaagaagcttgaggatattcggacccgctatgctttctga
DBGET
integrated database retrieval system
