Arvicanthis niloticus (African grass rat): 117723769
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Entry
117723769 CDS
T08817
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117723769 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117723769 (Mtrex)
03041 Spliceosome [BR:
anu03041
]
117723769 (Mtrex)
03009 Ribosome biogenesis [BR:
anu03009
]
117723769 (Mtrex)
03016 Transfer RNA biogenesis [BR:
anu03016
]
117723769 (Mtrex)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117723769 (Mtrex)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117723769 (Mtrex)
Spliceosome [BR:
anu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117723769 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
117723769 (Mtrex)
Ribosome biogenesis [BR:
anu03009
]
Eukaryotic type
Pre-60S particles
Helicases
117723769 (Mtrex)
Transfer RNA biogenesis [BR:
anu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117723769 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
DUF2486
Motif
Other DBs
NCBI-GeneID:
117723769
NCBI-ProteinID:
XP_034379216
LinkDB
All DBs
Position
19:41194611..41263306
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGTKKDKEREKEKWKGPPGSADKAGKRLDTKLQSESASGG
KNKRDLDVEGTDEPIFGKKPRIEDSVNEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYVPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggcgatgagcttttcagcgttttcgaggacgattcgaccactgca
gcagggaccaagaaagacaaagaaagggagaaagagaaatggaagggaccaccagggtct
gcagacaaggccgggaaacgactagataccaaattacaatcagaatcagccagtggtggg
aaaaacaagagagatctagatgttgaaggcacagatgaacctatttttggcaagaaaccc
aggatagaggactcagttaatgaagatttaagcttggcagacttgatgcccagagtcaag
gtacagtcagttgaaacagttgaaggctgtacacatgaggttgctcttcctgcagatgag
gattatgtcccacttaaacctcgagtggggaaggcagcgaaggaatacccattcattctt
gatgctttccaaagagaagccattcagtgtgttgataataatcagtctgtgttagtgtct
gctcatacatcagcgggaaaaactgtgtgtgctgagtatgctattgcattggctttaaga
gaaaaacagcgtgtaatatttaccagcccaattaaggctctaagtaatcagaaataccgt
gaaatgtatgaagagtttcaagatgtcggactgatgactggagatgttactattaatccc
acagcgtcttgtctggttatgactacagagattttgagaagtatgctgtacagaggctct
gaagtgatgcgagaagttgcatgggtcatatttgatgaaattcactacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttccagataatgttcactatgtc
tttctttcggctactattccaaatgctcggcagtttgctgagtggatttgccacctacat
aaacagccctgtcatgtaatttatactgattatcgacctactccattgcaacactacata
tttccagcagggggtgatggacttcaccttgtggttgatgaaaatggtgacttcagagaa
gacaattttaacactgcaatgcaagtgcttcgggatgcaggtgatttggccaaaggagac
cagaagggacggaaaggaggaacaaaaggtccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattatcttcagttttagtaagaaggactgtgaa
gcgtatgctcttcagatgactaagttagatttcaacacagatgaagaaaagaagatggtt
gaagaagtttttaataatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgaacatgtacttccacttttgaaacgggggattggtattcaccatggtggtttactt
cctattttgaaggaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagaaacttttgctatgggaattaacatgccagctagaaccgttttatttacaaat
gcccgtaaatatgatggaaaggattttagatggatttcctctggtgagtacatccagatg
tctggtcgtgctggaaggagagggatggatgacagaggaattgtgattctcatggtggat
gagaagatgagccccacaattggaaagcaactgcttaaggggtcagctgatcctctgaat
agtgcttttcatctgacctataacatggttttgaacttattaagagtagaagaaatcaat
cccgaatacatgcttgaaaaatccttctaccagtttcagcattatagagcaattccgggt
gtcgtagaaaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaaatgtggtcatctattacaagattagacagcaacttgccaagctgggaaaagagatt
gaagaatatattcataagccaaaatactgcttaccctttctgcaaccaggtcgtttggta
aaggtgaaaaatgaaggtgatgattttggctggggagtagtagtgaacttctcaaaaaag
tcaaatgtcaagcctaattctggtgaactggatcccttgtatgtggtggaagttctccta
cgatgtagcaaagaaagcctgaaaaactcagctaccgaggcagcaaagccagccaagccg
gacgagaaaggagagatgcaggtcgttccagttctggtgcatctcctgtctgccatcagc
actgtcaggctctacattccaaaagaccttcgacccgtggacaacaggcagagcgtctta
aagtccatacaggaagttcaaaagcgctttcctgacggtgttcctctgttagatcctatt
gatgacatgggcattcaagatcaaggactgaaaaaagtcattcagaaagtagaggctttt
gagcaccgaatgtactcgcatccacttcacaatgatcccaatttggaaactgtatataca
ctttgtgaaaaaaaggcacagattgcaatagatattaagtctgcaaagagagaactgaag
aaagcaaggactgttctgcaaatggatgaactcaaatgtcgcaagcgtgttcttagacgg
ctgggatttgcgacgtcttctgatgtcatagagatgaaaggacgggtggcttgtgaaata
agcagtgctgatgagctccttctaacagagatgatgttcaatgggcttttcaatgacctt
tcttcagaacaggcaaccgcactgttaagctgtttcgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagctggaccactccgacaaatgcaggaatgtgctaaa
aggattgcaaaggtttcagcagaggcaaaactggagattgatgaagaaacttacctaagc
tcattcaagccgcacctcatggatgtggtgtatacttgggcaactggggccacatttgct
catatctgcaaaatgacagacgtctttgaaggcagtataattcgttgtatgaggcggctg
gaagaactgcttcggcagatgtgtcaagcagcaaaagccattggaaatacagagctggag
aacaaatttgctgaaggaattaccaagatcaagagggatattgtctttgctgccagcctc
tacttatag
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