Arvicanthis niloticus (African grass rat): 117724143
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Entry
117724143 CDS
T08817
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117724143 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117724143 (Col18a1)
00535 Proteoglycans [BR:
anu00535
]
117724143 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117724143 (Col18a1)
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117724143 (Col18a1)
Proteoglycans [BR:
anu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117724143 (Col18a1)
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117724143 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Mucin
Motif
Other DBs
NCBI-GeneID:
117724143
NCBI-ProteinID:
XP_034379636
LinkDB
All DBs
Position
20:complement(41651901..41765261)
Genome browser
AA seq
1766 aa
AA seq
DB search
MALDPSRRLCLLLLLLLACCLVPVNADGNSLSPLNPLVWLWSAKTPDSLEGPVSKPQISS
PVQSTENPTTHVVPQDGLAGQQTTSASPKLSPEEDREAGQGGSPATPAVPIPLVAPAASP
DTKEENVAGVGAKILNVAQGIRSFVHLWDEDFTNEHTAGIEASDSSVPTVLPTPADLSSA
PQGSKTTLWLSSGVPSSPDAQTTEAVPTQPPPFQSSLQAPLGRPSVPPASPGRAFLPLTR
IRAPPWGQQEPPRQPRHLEGKEFLPMAARSSRQHRHSDVHVDIHGHVPPLPLVTGPLVTA
SLSVHGLLSVPPSDPSAQLSQVSALPGFPGAWVSLVASSSGLSNDSAQVGNGSLTSTSRC
LPLPPTLAVCSHLGIGHFWLPNHLHHTDSAEVEATAQAWGHLLHTNCHPFLAWFFCLLLA
PSCGPGPPPALPPCRQFCEALEDECWNSLAGDRLPVVCASLPSQENGYCVFIGPAAEHAV
EEVGLLQLLGDPLSQQISQIDDPHVGPAYIFGPDSKSGQVARYHFPKLFFRDFSLLFHVR
PATEAAGVLFAITDASQVVVSLGVKLSEVRDGQQNISLLYTEPGASQTQTGASFRLPAFV
GQWTHFALSVDGGSVALYVDCEEFQRVPFARSSQGLELEHDAGLFVGQAGAADPDKFQGV
ISELKIRSTPRVSPVHCLDEDDDDEDRASGDFGSGFEESSKLHREDASLLPGLPRPPPVT
SPPLAGGSTTEDSRTEETEEEATVDSIGAETLPGTDSSGAWDGVQNPGGGLIKGGLKGQK
GEPGAQGPPGPAGPQGPAGPVLQSPSSQPVPGAQGPPGPQGPPGKDGIPGRDGEPGDPGE
DGRPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPPGPPGPSFRQDKLTFIDMEGSG
FSGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSYTPGPAGLPGVPGKEGPPGFPG
PPGPPGPPGKEGPPGVAGQKGNVGDVGIPGPKGSKGDLGPIGMPGKSGLAGPPGPVGPPG
PPGPPGPPGPGFAAGFDDMEGSGIPLWSTVRSSDGLQGPPGLPGLKGDPGMTGPPGAKGE
VGADGAQGIPGPPGREGTAGFPGPKGEKGIQGEKGNPGKDGVGRPGLPGPPGPPGPVIYV
SNEDRAVMSTPGPEGKPGYAGFPGPAGPKGDLGSKGERGLPGPKGEKGEPGTILSPDGRA
LGLAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGTNGLKGEKGEPGDTSLGFSM
RGMPGPPGPPGPPGPPGMPIYDSNAFVESGRPGQPGQQGVQGPSGPKGDKGEVGPPGPPG
QFPIDLFDLEAEMKGDKGDRGDAGQKGERGEPGAPGGGFFSSSVPGPPGPPGPPGYPGIP
GPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPG
PPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAEREELYVRVRNGFRKVLLEA
RTALPHGTGNEVAALQPPLVQLHEGSPYTRREHSYSTARPWRADDILVNPPRLPDHQPYP
GVPHHHSSYVHLPPARPTTSPAHTHQDFQPVLHLVALNTPLSGGMRGIRGADFQCFQQAR
AVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDTLFSGSQGQLQPGA
RIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTEATGATGQASSLLSGRLL
EQKAASCHNSYIVLCIENSFMTSFSK
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgaccccagcagacgcctctgcctgctgctgctgctgctgcttgcctgctgc
cttgtgcctgtcaacgctgatgggaattccctgagtcccctgaatcctctggtgtggctc
tggtctgccaagacccctgattccttggaaggcccggtctcgaaaccccagatcagttca
cctgtgcagtccacagagaaccccaccacgcacgtggtcccccaggatggcctcgcagga
caacagacaacttctgccagccccaagctgtccccggaggaggatcgggaagccggccag
ggtggcagccctgcaacccctgctgtccccattcccctggtggcccctgctgcgagccca
gacacgaaggaggagaatgttgccggcgtgggagccaagattctgaatgtggctcagggc
atccggagcttcgtccatctgtgggatgaggacttcactaatgagcacactgctggaatc
gaggcttcagattcctcagtccctacagtcctccctactcctgctgacctctccagtgct
ccccaggggagtaagaccactctctggctaagcagtggcgttccaagttctccagatgct
cagacaactgaggctgtgcccacccagccgcctcccttccaaagcagcctccaggcacca
ctgggaagaccctcagtaccaccagcatccccaggtagagcatttctccctttgacacgg
atcagggctcctccctgggggcaacaagagcctcccaggcagccccggcatctggagggg
aaagaattcttgcctatggcagccaggtccagccggcagcacagacactctgatgtccac
gttgacatccacgggcacgtacctcctcttcccttggtgacgggtcctctggtgacggct
tctctgagtgtgcacggtttactctctgttcctccctctgacccttcagcccaactctct
caggtatcagctttacctgggttccctggtgcttgggtttccctcgtggcttcctcttca
gggctttctaatgactccgcacaagtgggaaatggctctctgacctctaccagccgctgc
ctgcccctgccgcccactttggccgtctgcagccacttaggtattggacacttttggttg
cctaatcatcttcaccatacggacagcgcggaggtagaggccaccgcacaggcttggggg
cacctcctccatacaaactgccaccccttccttgcctggttcttctgtctgctgctggct
ccttcctgtggcccgggcccaccacctgccttgccaccctgccggcagttctgtgaggcc
ctggaagatgagtgttggaactctctagctggggacaggctacctgtcgtctgtgcctct
ctcccttctcaggagaatgggtactgtgtgttcattgggccagctgcagagcatgctgtt
gaggaggtggggctactgcagctccttggagaccccttatcccagcagatctcacaaatc
gacgaccctcacgtcgggccggcctacatctttggaccagactccaaaagtggccaggtg
gcccggtaccacttccctaaactcttcttccgggacttttcgctgctgtttcatgtccgg
ccagccacagaggccgcaggggtgctgtttgccatcaccgatgcctcccaggtggtagtc
tcactaggcgtgaagctctcagaggtccgagatggacagcaaaacatctcattgctctac
acggagcctggtgccagccagacccagacaggagctagcttccgcctacctgcgtttgtt
ggccagtggacacacttcgcgctcagcgtggatggaggctctgtggctctctatgtagac
tgtgaagagttccagagggtgccatttgctcggtcctcacagggtctggagctggagcat
gatgctggcctctttgtgggtcaggctggagcagcagaccctgacaagttccagggggtg
atctcggagctgaaaatacgcagtaccccccgggtgagcccggtgcactgtctggatgaa
gatgacgatgatgaagacagggcatctggagactttggaagtggctttgaagaaagcagc
aaattgcacagggaggatgcatctctactacccgggttaccccggccacctcctgtcact
tccccacccctggctggaggcagcaccacagaagattctagaacagaagaaacggaggaa
gaagccactgtagattctataggagctgagactcttcctggcacagattcaagtggtgca
tgggatggtgtccagaaccccggaggtggcttgataaagggaggtctaaaaggacaaaag
ggagaaccaggtgctcagggcccacctggcccagctgggccccagggtcctgccggtcca
gtgctacagagtcccagctcacaacctgtccctggagcacaaggaccaccgggacctcag
gggccaccagggaaggatggcattccaggaagggatggtgaaccgggtgaccctggtgag
gacgggagaccgggtgacactggacctcaaggctttccagggaccccaggagacgtgggc
cctaagggtgaaaagggagatcctggtgttgggcctcgaggacctccaggacctccaggg
ccaccaggaccctccttcagacaggacaagctgaccttcattgacatggagggatctggt
ttcagcggagacctagaaagcctcagaggcccacgaggcttccctggtcccccaggaccc
cctggtgtcccaggactgcctggtgagccagggcgctttggagtcaacagttcctataca
ccaggacctgcaggccttcctggtgtgcctgggaaggaagggccccccggttttcctggt
cccccgggacctccaggtcctccaggcaaagagggcccaccaggagtggccggccagaaa
ggcaatgttggtgatgtgggtatcccaggacccaaggggagcaaaggagacctcgggccc
atcggtatgcctggaaagtctggcttggctggaccccctggaccagtaggacccccagga
cctcctgggcctccagggccaccaggaccaggatttgctgctggatttgatgacatggaa
ggctctggaatacccctctggtcaacagtccgaagttctgatgggctgcagggacctccg
gggttgccaggactcaagggggatcctggaatgacagggccacctggagccaagggagaa
gtcggggcagatggagcccagggcatccctggtcccccaggaagagagggtacagctggg
ttcccgggtccaaaaggagagaaagggatccagggagaaaagggaaacccaggaaaagat
ggagtgggccggccaggccttcctggccctccaggccctccagggcctgtgatctatgtg
tcgaatgaggatagggctgtgatgagcacgccaggacctgagggcaagccagggtatgca
ggctttcctggacctgctggaccgaagggtgacctgggttccaaaggcgagaggggtctt
ccggggcccaagggtgagaagggagagccaggcactatccttagccccgatggcagagct
ctgggtctcgcccagaagggagccaagggagaaccaggctttcgaggacccccgggtcct
tatggacggcctgggtacaagggtgaaattggcttccccggacggccgggtcgtcccgga
acgaacggcttaaagggagagaaaggggagcctggagacaccagccttggatttagcatg
aggggaatgcctgggccccctgggcctcccggccccccaggtcctccagggatgcccatc
tatgacagcaatgcatttgtggagtctggccgacctggacaaccaggacagcaaggtgtg
caggggccttcaggaccaaagggtgacaaaggagaggtgggcccacccgggccaccaggg
cagttccccatcgacctcttcgacctggaagctgaaatgaagggggacaagggagaccga
ggggatgctggacaaaaaggagagaggggagaacctggggctcctggtggtggattcttc
agctcaagtgtacctggcccacccggcccccctggcccacctggataccctggaattccg
ggtccaaagggagagagcattcggggtccacctggccctcctggcccacaaggacctcct
ggcattggctatgaggggcgccaaggccccccgggacctccaggacctccaggacctccc
tccttccctggccctcacagacagactgtcagtgttcctggtcctccgggcccgcctggg
cccccaggtcccccaggagccatgggtgcctctgctgggcaggtgaggatctgggccaca
taccagactatgctggacaagatacgtgaggtgccagagggctggctcatctttgtagcc
gagagagaagagctctacgtccgggttagaaacggcttccggaaggtgctgctggaggcc
cggacagccctcccgcatgggacgggcaacgaggtagctgctttgcagcccccattggta
caactccatgagggcagtccatatactcggagggagcactcctattccacggcacgaccc
tggcgagcagatgacatcttggtcaacccaccacgtctgccagaccaccagccttaccct
ggggttccacaccaccacagttcttatgtgcacctgccgccagctcgccccacgacctca
cctgcccacactcaccaggactttcagccagtgctccacctggtggcactgaacacccct
ctgtctggaggcatgcgtggtatccgcggggcagatttccagtgcttccaacaagcccga
gctgtggggctgtctggtaccttccgggccttcctgtcctctcggctgcaggacctctac
agcattgtacgtcgtgctgaccgagggtctgtgcccattgtcaacctgaaggacgaggtg
ctatctcccagctgggacaccctgttttccggctcccagggtcaactccaacctggggcc
cgcatcttttctttcgacggcagagatgtcctgagacacccagcctggccgcagaagagc
gtatggcacggctcagaccccagtgggcgcaggctgatggagagttactgtgagacatgg
aggactgaagctactggggctacaggtcaggcctcctccctgctgtcaggcaggctcctg
gaacagaaagccgcgagttgccacaacagctacatcgtcctgtgcattgagaatagcttc
atgacctctttctccaaatag
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