Arvicanthis niloticus (African grass rat): 117724228
Help
Entry
117724228 CDS
T08817
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03015
mRNA surveillance pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117724228
09122 Translation
03013 Nucleocytoplasmic transport
117724228
03015 mRNA surveillance pathway
117724228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117724228
03041 Spliceosome [BR:
anu03041
]
117724228
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117724228
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117724228
Spliceosome [BR:
anu03041
]
Complex C
Other components
EJC/TREX
117724228
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117724228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
P-loop_SecA
zf-C3HC4_4
DUF6707
Motif
Other DBs
NCBI-GeneID:
117724228
NCBI-ProteinID:
XP_034379828
LinkDB
All DBs
Position
20:complement(50581306..50583960)
Genome browser
AA seq
182 aa
AA seq
DB search
MEIFVDDETKLTLHGLQQYYVKLKDNEKNQKLFDLLDVLEFNQVVIFVKSVQRCIALAQL
LVEQNLPAIAIHHGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE
DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ
TR
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atggagatcttcgtggatgacgagaccaagttgacactgcacgggttgcagcaatactac
gtgaaactgaaggacaacgagaagaaccagaagctctttgaccttctcgatgtcctcgag
ttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgcatcgccctggctcagctt
ctagtggagcagaacttaccagccattgctatccaccatgggatgccccaggaagagagg
ctctctcggtatcagcagttcaaggattttcagcggaggattcttgtggctaccaacctg
tttggccgaggcatggacattgagcgtgtgaacatcgcgttcaactatgacatgccagag
gactcggacacctacctgcacagggtggccagagcgggccggtttggcaccaagggcttg
gccatcacatttgtgtcagacgagaacgatgccaagatcctgaatgacgtgcaggaccgt
ttcgaggtcaacatcagtgagctgcccgatgagatcgacatttcctcctacattgagcag
acacggtag
DBGET
integrated database retrieval system
