Arvicanthis niloticus (African grass rat): 117724319
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Entry
117724319 CDS
T08817
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03015
mRNA surveillance pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117724319 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
117724319 (Ddx39b)
03015 mRNA surveillance pathway
117724319 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117724319 (Ddx39b)
03041 Spliceosome [BR:
anu03041
]
117724319 (Ddx39b)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117724319 (Ddx39b)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117724319 (Ddx39b)
Spliceosome [BR:
anu03041
]
Complex C
Other components
EJC/TREX
117724319 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117724319 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117724319
NCBI-ProteinID:
XP_034379911
LinkDB
All DBs
Position
20:49797610..49810340
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgacgtggacaacgagctcttggactatgaagacgatgaggtggagacg
gccgccggggccgatgggaccgaagctcccgccaagaaagacgtcaagggctcctacgtc
tccatccacagctccggctttcgagatttcctgctcaagccagagttgctccgggccatc
gttgactgtggctttgagcatccgtcagaggtccagcatgaatgcatccctcaggccatt
ctggggatggacgtcctgtgccaggcaaagtcaggcatgggaaaaacagcagtgtttgtc
ctggccacactgcagcagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcttttcaaatcagcaaggaatatgagcgtttctcaaagtacatg
ccgaatgtcaaggtggcagtgttttttggcggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacacattgtcgtggggactcctggccgaattctagccctggct
cgaaataagagcctgaacctcaaacacattaaacactttatcttggatgaatgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtctgccga
aagttcatgcaagatcctatggagatctttgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcccagcttctagtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctctctcggtatcagcagttcaaggattttcagcggaggatt
cttgtggctaccaacctgtttggccgaggcatggacattgagcgtgtgaacatcgcgttc
aactatgacatgcccgaggactcggacacctacctgcacagggtggccagagcgggccgg
tttggcaccaagggcttggccatcacatttgtgtcagacgagaacgatgccaagatcctg
aatgacgtgcaggaccgtttcgaggtcaacatcagtgagctgcccgatgagatcgacatt
tcctcctacattgagcagacacggtag
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