Arvicanthis niloticus (African grass rat): 117724366
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Entry
117724366 CDS
T08817
Symbol
Skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117724366 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117724366 (Skic2)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117724366 (Skic2)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117724366 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
117724366 (Skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
117724366
NCBI-ProteinID:
XP_034380006
LinkDB
All DBs
Position
20:complement(49189107..49199943)
Genome browser
AA seq
1244 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAALGAPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLHRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLSTQEEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPVPGLLSLSRLLEPLDLSGGDEDEGEAAGGPKGDAAP
ASPSSTSLVRASSLEDLVLKEASTVVSTLEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALADLTKRLGALEEPDVTGQLADLPDYYSWAEELTETRNMIQRRIMESVNGLKSLSVGR
VVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSESQRDKGPATPDVPHPDDLV
GFKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKIFEDFSRRQQPKFRKDPPLAAVT
TVVQELLRLAQAYPAGPPTLDPINDLQLKEVAVVEGGLRARKLEELIRGAQCVHSPRFPA
QYVKLWERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVA
KRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgttctgcctcccccagatcccctgaacctgccccttcga
gctctggaagtgggctgcactggccgttgggagctgctgaacgtgccagggcctccagag
agcactcttccccatggcctccctccgtgtgccccagatctgtgccaggaagcagagcag
ttgtttctgtcatctccggcctggcttcctctacatggtgtagagcactcagctcgaaaa
tggcagaggaagacagatccctggtcactcctggctgctctgggggctccagtcccatcc
gaccttcaggcccagagacacccaaccacaggccatatactgggctataaggaggtcctg
ctggagaacacaaacctgtcggccacaacctccttgtcccttcatcggcctccagggcca
gcctcccagtcgctatggggcaatccgacacagtaccctttctggccaggtgggatggac
gagcccagcataactgatctgagtactcaggaggaagctgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggggtggattttgcccccaaagat
cacccagctcctgtgccaggcttgctcagcctcagccgtctgctcgagcctctagatcta
agtggaggtgacgaggatgagggagaggcagcaggaggccctaaaggggatgctgctcca
gcctccccctccagtacttccctggtccgagcaagcagcttggaggatctcgtgttgaag
gaagcttccacagttgtatccaccctggagcctcccaaacctccacctcaggaacagtgg
gccgtgcctgtggacgtcacctcgcccgtgggtgatttttaccgtctcatccctcagcca
gccttccagtgggcgtttgagccagatgtgtttcagaagcaggccatcctgcacttggag
cagcacgactctgtgtttgttgcagctcacacatccgctgggaagacagtggtggctgaa
tacgccatcgccctggcccagaaacacatgacccgtaccatctacacttctcctatcaaa
gccctgagcaaccagaagtttcgggacttccgaaacacattcggggacgtggggctgctc
acgggggacgtgcagctgcatccagaggcctcctgcctcatcatgaccacggagatcctt
cgctccatgctgtacagtggctcagacgtcatccgagacctggagtgggtcatctttgat
gaagtccactatatcaacgatgctgagcgcggcgtcgtgtgggaggaggtgctcatcatg
cttccggagcacgtgtccatcatccttctgagtgctaccgtccccaacgccctggagttt
gctgactggattgggcggctgaagcggcggcagatctatgtgatcagcacggttgcccgt
ccggtccccctggagcactatctcttcacaggaaacagccccaagacacagggagagctc
ttcctgctgctggactcccgaggggccttccacaccaaggggtactatgctgcggtagag
gccaagaaagagaggatgagcaaacatgcccagacctttggggccaagcagcccacgcac
cagggcgggcctgcacaggaccgtggggtgtacctgtccctgctagcttccctccggacc
cgggctcagttgccagtggtggtgttcaccttctcccgaggccgctgtgatgagcaggct
tcgggtctcacctctctggacctcacaacaagctcggagaagagtgagatccacctcttc
ctgcagcgctgccttgctcggctccgaggctctgaccgacagctaccccaggtcctgcac
atgtcggagctccttcgccgaggcctgggtgtgcaccacagtggcatcctgcccatcctt
aaggagatcgtggagatgcttttcagccggggcctggtcaaggtcctgtttgccactgag
acttttgcaatgggggtaaacatgccagcaaggacagtggtgtttgactccatgcgcaaa
catgatggctctaccttccgggacctgctgcctggggaatacgtgcagatggcaggccgg
gcaggccggaggggcctggaccccacaggcaccgtcatccttctctgtaagggccgagtg
cctgagatggcagatttacatcgcatgatgatggggaagccatcccagcttcagtcccag
ttccgcctcacatataccatgatcctcaacctgctgcgggtggacgccctcagagtggaa
gacatgatgaagcgcagcttctcagagttcccgtcccgcaaggacagcaaggctcatgag
caggctctggctgacctcaccaagaggctgggagctctggaggagcccgatgtgaccggc
cagttagctgacctgcctgactattacagctgggcagaggagctgacagagacccggaac
atgatccagcgacgcatcatggagtctgtgaacgggctgaagtctctgtctgtgggaagg
gtggtagttgtgaagaatgaggagcatcacaacgcactgggtgtgatcctgcaggtctcc
tcaaactccaccagcagggtatttacaacattggtcttgtgtgataagcctgtggtgtcg
gagagccaaagagacaaggggccagccactccagatgtgccccacccagatgacctcgta
ggcttcaagctgttcctgccagaagggccctgtgagcacacggttgccaagctccagcca
ggagacgtggctgccatctcgaccaaagtgctccgggtgaacggggagaagatctttgag
gacttcagcaggaggcagcagccgaaattcaggaaggaccctccccttgcggctgtgacc
actgttgttcaggagctgctgcgtctggctcaggcctatccagctggacccccaaccctt
gaccctatcaatgacctgcaactcaaggaggtagcagtggtagaaggcgggctccgggct
cggaagctagaggagctgatccgtggggcccagtgcgtgcacagcccccggtttcctgcc
cagtacgtgaagctgtgggagcgaatgcagattcagaaggaaatggagaggctgcgcttc
ctcctgtccgaccagtcgctgttgctgctcccggagtaccaccagcgcgtagaggtgctc
cggaccctgggctatgtggacgaggctggcacagtgaagctggcaggccgagtggcctgc
gccatgagcagccatgagctgctcctcacagaactcatgtttgacaatgcattgagcgcc
ctgcgaccggaggaaattgcagctctactctctggcctggtgtgccagagccctggggac
cctggggaccagctcccaagcacccttaaacagggggtggaacgagtcaaagctgtggcc
aagcggattggtgaggttcaggtggcctgtggcctgaaccagacggtggaggagtttgtg
ggagagctgaatttcgggctggtcgaggttgtctacgagtgggcccggggtatgcccttc
tcggagctggcagggctctcggggacccctgaaggcttggttgtccgctgcatccagcga
ctggctgagatgtgtcgctcgcttcgaggagcggcccgtttggtaggagagcctgtgttg
ggtgccaagatggagacggcggccaccttgctaaggcgggacatcgtcttcgcagccagc
ctctacacccagtaa
DBGET
integrated database retrieval system
