Arvicanthis niloticus (African grass rat): 117724468
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Entry
117724468 CDS
T08817
Symbol
Col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04820
Cytoskeleton in muscle cells
anu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117724468 (Col11a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117724468 (Col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117724468 (Col11a2)
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117724468 (Col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117724468
NCBI-ProteinID:
XP_034380187
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All DBs
Position
20:48367535..48395410
Genome browser
AA seq
1736 aa
AA seq
DB search
MERCSRCHRLLLLLPLVLGLSSAPGWAGAPSVDVLRALRFPSLPDGVRKSKGVCPGDVAY
RVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQVPLLTLYSAQGVQQMGLELGRPV
RFLYEDQRGRPQASAQPIFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSVH
PVLDTQGVVIFGAHILDDEVFEGDVQELLIVPGVQAAYQSCGQKDLECEREQRDGPQTQK
PHRAQRSPKKEPARLHKPQNQEPQQQPTESLYYDYEPPYYDVMTTGTAPDYQYPTPGEEE
GVLESSPLPFLEEEQTDLQVPPTADSFQAEEYGEGGTDSPAGFYDYTYGYGDDYREETEL
GPALSAETAHSGAVAHGPRGIKGEKGESAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGPPGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGEAGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGQRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPTGLVGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGVKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGEIGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGQKGEPGEPGSPGVQGEPGVKGPRGERGEKGEAGQAGEAGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGTPGLEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGHP
GATGQAGPPGPVGPPGLPGLRGDAGTKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSP
GQKGETGIPGASGPIGPGGPPGMPGPSGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSQLMQEEEAVPTGGAPGSPAGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVSQDGPLKLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPTRRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccaccgcctccttctgctcttacctctggtgctgggtctg
agctctgccccgggatgggcaggtgcaccctctgtggacgtgctacgtgccctgaggttc
ccctcccttcctgacggtgttcggaaatcaaaaggggtctgtccaggtgatgtggcttac
cgcgtggcgcggcctgcccagctcagcgcgcccacccgccagctcttcccaggaggcttt
cccaaagatttctctctgctgactgttgtccggacccgccctggcctccaggttccactc
ttgactctatacagtgcccagggagtccagcagatgggcctggagcttggccgccccgtc
cgctttctctatgaggaccagaggggaaggccacaagcctccgctcagcccatcttccga
ggcctcagcctagcagacggcaagtggcaccgtgtggctgtggctgtgaagggtcagtct
gtcactctcattgtggactgtaagaagcgagtcacccggccccttccccgaagtgtgcat
ccagtgctagacacccagggggtggtgatctttggtgcccacatcctcgatgacgaggtc
ttcgaaggggatgttcaggagctcctcattgtcccaggcgtccaagctgcctaccagtct
tgtggacagaaggatctggaatgtgagagagaacagagggacggacctcagactcagaag
cctcacagagcccagagatctccaaagaaggaaccagcaagacttcataagccacagaac
caggagccccagcagcagcccactgagtctctctactatgactacgaacccccctattac
gatgtgatgactacggggacagcccctgattatcagtaccccaccccaggtgaagaggaa
ggagtcctggagtccagccccttgccatttcttgaagaggagcagacagatctccaggtc
cccccaacagctgacagtttccaggcagaggaatatggggagggaggcacagactcccca
gcagggttctacgattacacctatggctatggggatgattatcgtgaggagaccgagctt
ggccctgccctctctgcggagacagctcactcaggagccgttgcccacggacccaggggg
ataaagggagagaagggagagtctgcggtgctagagcctggtatgtttgtagagggaccc
ccaggcccagaaggcccagcgggattagctggaccccctggcatccaggggaacccaggc
ccagttggagaccctggtgagaggggcccccctggtcgggcagggctccctggatcagac
ggaccccctggtcctcctggcacgtctctgatgctcccattccggtttggcagcagtggg
ggtgacaagggccccgtggtggcagcccaggaggcccaggcccaggcgattctgcagcag
gcacggctggccctccgtgggcccccaggccccatgggatacacgggccgccctggaccg
ctgggtcagcctgggagccctggcttgaagggagaagctggagacctgggcccacagggc
cccagaggacctcagggccttacaggccctcctggcaaggctggacgaaggggccgagca
ggtgcagatggagcccgtgggatgcctggggaacctggcgtgaagggtgaccgaggtttc
gacggacttccagggctgcctggcgagaagggacaaaggggcgatacaggtgctcagggc
cttcctgggcctcctggtgaggacggagagaggggtgacgatggagagattgggccccgg
gggctgcctggagagtcaggacctagaggactccttggccccaaaggcccacctggtatt
cctgggcccccgggagtccgaggcatggatggtccccatggtcccaaagggagcttggga
cctcaaggtgagcctggacctcctggacaacagggcactcctggaacccagggcctccca
ggacctcagggtgccattggtcctcatggagagaagggtcctcgtgggaaaccaggcctc
cctggcatgcctggatcagatggcctcccgggtcacccagggaaggaaggtccccctggg
accaaagggaaccagggtccctccggaccacagggtcctttaggatacccaggccctcga
ggcgtcaagggtgtggatggaattcggggcctgaagggccacaagggtgaaaagggcgag
gacggctttcctgggttcaaaggtgacataggggtgaaaggagacaggggcgaggttgga
gtccctggttccaggggagaagacggccctgaagggccgaaagggcgcactggacctact
ggagaccccggacccaccgggctcgtgggcgagaagggcaagctaggtgttcctggtctg
cctggctaccccggacgccagggtcccaagggatccctgggttttcctggttttcctgga
gccagtggagagaagggagcccggggcctgtctgggaaatcaggacctcggggagagcgg
ggccccacgggcccaaggggtcagcggggacctcgaggtgccactgggaagtctggagtt
aagggaacatcaggtggtgatggtccccacgggccacccggagagaggggtcttcctgga
cctcaaggccccaatggatttcctggccccaaaggccctccgggccctgcagggaaggat
gggctgccaggacacccaggccagagaggagaagtgggattccaagggaagaccggcccc
ccaggcccaccgggagtggtgggacctcagggagcagctggagaaagcggtcccatgggg
gagagaggtcaccctggccccccaggacctcctggagagcaaggactgcctggaacagct
gggaaggaaggaaccaagggtgaccctggtccccctggggccccagggaaggatggtcct
gctggtctgagaggcttcccaggagagcgaggcctcccgggcactgctggcggacccggc
ctgaagggaaatgaaggcccagctggccctcctggccctgcaggctctcctggcgagcga
ggtgcagcaggatcagggggccccattggtcccccggggcgtccaggcccacaaggtccc
cctggagcagcaggagagaaaggcgtgccgggtgagaaaggccctattggtcccactggt
cgtgatggggtgcagggccctgtggggcttcctggtcctgcgggacccccaggcgtggcc
ggggaggatggagacaagggtgaagtgggagaccctggacagaagggaaccaagggaaac
aagggtgagcacggccctcctggacctcctggtcccatcggtcctgtggggcaacctgga
gctgcgggagctgatggcgagcctggagctcggggaccccagggacactttggagccaaa
ggtgacgaaggaacaagaggattcaatgggcccccgggacccatcggtctacagggcctg
ccaggaccctctggggagaagggagaaataggagacgtggggcctatgggaccccctggc
cctccaggacctcgaggccccgctggacccaatggtgctgatggcccacaaggtccccct
ggaggtgttgggaacttgggtccccctggacagaagggtgaaccgggggagccagggtct
ccgggcgtccagggtgagccaggcgtcaagggtccacgtggagagcgtggtgagaaagga
gaggctgggcaggcgggagaggctggaccaccagggcccaaaggccctacaggcgatgat
ggccccaaggggaaccctggtcctgttggctttcctggggaccctggccctcccggagaa
gctggcccacggggccaggatggagctaagggagaccgaggcgaggatggagagccagga
cagcctggatcccctggtcccaccggggagaacgggcccccgggaccccttggaaagcgg
ggacccgctggcactcctggtctagagggacggcagggagagaagggagccaagggagac
cctggtgctgtgggggccccgggaaagacaggccctgtgggtcctgcaggcccagcagga
aagcctggccccgatggtcttcgggggctccctggttcagtgggtcagcaaggccaccct
ggagccacgggccaggctgggcccccaggtcctgtgggacccccagggcttcctggcctc
cggggtgatgctggaaccaagggggagaagggtcacccaggtctcattggactgattggg
ccaaccggagagcaaggcgaaaagggtgaccggggccttcctggccctcagggctcaccc
ggacagaagggagagacgggtatcccaggagcatctggccccatcggtcctggagggcct
cctggcatgcctggaccctctggccccaaaggagccaaaggagccaccggccctgctgga
cccaagggggagaaaggcgtccagggccctccaggacacccgggtcccccgggcgaggtg
atccagccactgcctatccagatgcccaagaagacccgccgctccgtggacggaagccaa
ctcatgcaggaggaggaggccgtgcccactggcggtgccccgggcagtcctgcagggctg
gaggagatctttggctcactggactctctgcgggaggagatcgagcagatgaggaggcca
acggggacccaggacagccctgctcgaacctgccaggacttgaagctgtgccaccccgag
cttcctgatggagagtactgggttgaccccaaccagggctgtgctcgagatgccttccgg
gtgttctgcaactttacagcaggaggggagacatgtgtcacgcctagggatgatgtcaca
cagttctcctatgtggactctgagggctccccagtgggtgtggtccagctcaccttcctg
cggctgctcagtgtctcggcccaccaggatgtctcttacccttgctctggagtgtcccag
gatggtcccctgaaactccgaggggccaacgaggatgagctgagccctgagaccagccct
tacgtcaaggagttcagagatggctgtcagacccagcaaggccggacggtgttggaggta
cgcacgcctgtactggagcagctgcccgtgctggatgcttccttctcagacctgggggcc
cccacaagacggggaggggtgcttctggggcctgtctgcttcatgggctag
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