Arvicanthis niloticus (African grass rat): 117724474
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Entry
117724474 CDS
T08817
Symbol
Vps52
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117724474 (Vps52)
Membrane trafficking [BR:
anu04131
]
Protein recycling
Others
EARP complex
117724474 (Vps52)
Endosome - Golgi transport
Tethering complex
GARP complex
117724474 (Vps52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
Dor1
COG6_N
Sec3_C-term
Rubis-subs-bind
Retrotrans_gag
CCDC113_CCDC96_CC
ATG16
CENP-F_leu_zip
DUF1664
Motif
Other DBs
NCBI-GeneID:
117724474
NCBI-ProteinID:
XP_034380206
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Position
20:48233726..48243055
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AA seq
723 aa
AA seq
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MAAAATMAAAARELVLRAGASDMEEEEGPLGGVSGLQEPLQLGELDITSDEFILDEVDVH
IQANLEDELVKEALRTGVDLRHYSKQVEQELQQIEQKSIRDYIQESENIASLHNQITACD
AVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSA
LVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIRE
FILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGNECATAKEIRDEYVETLSKIYLSYY
RSYVGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNTIFTLGTRGAVISPAELE
APILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICDFFIVSGLAAHDLFHAVMG
RTLSMTLKHLESYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRF
ELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQ
VEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEF
IEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDV
MRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHK
PNF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgcagcgaccatggcggctgctgcccgagagctggtgttgcgggctggggcc
tctgatatggaggaggaggagggcccactggggggtgtttctggactccaagagccccta
caacttggggagctggatatcacctctgatgaattcatcttggatgaagtggatgttcac
atccaggcaaatctggaggatgagttagtgaaggaagctctcagaacgggtgtggatctt
cgacactattcaaagcaggtggagcaggaactgcagcagattgagcagaaatcaatccgg
gactatatccaagagagtgaaaacatagcatctctgcacaatcagatcacagcctgtgac
gctgtcctggagcgcatggagcagatgctgggagcttttcagagcgacctcagctccatc
agctctgagatccggaccctgcaggagcagtcaggagccatgaacatccggcttcgtaac
cgacaggcagttcgaggaaaacttggggaactcgtcgatgggctggtggtgccttctgct
ctggtcacagcaattctggaagctccagtgacagagcccaggttcctggagcagctacag
gagctggatgccaaggcagctgcggtcagagaacaggaggcgagaggcaccgctgcctgt
gcagatgtcagaggcgtgctcgaccggctccgggtcaaggcagtgacaaagatccgtgag
ttcattcttcagaagatttactcattcagaaagccgatgaccaactatcagatcccccag
acggccctgctgaagtacaggtttttctatcagttcctgctgggcaatgagtgtgctaca
gccaaggagatcagggatgagtatgtagagacactgagcaagatctacctgtcatactac
cgctcttatgtggggcggctcatgaaagtgcagtacgaggaagttgctgagaaagacgat
ctaatgggtgtagaagacacagcaaagaagggattcttctcgaagccgtccctccgaagc
aggaacaccatctttaccctgggcacccgtggtgctgtcatctcaccggccgagctcgag
gcccccatcctggtgccccatactgcccagcgtggagagcagaggtatccatttgaagca
ctcttccgaagccagcactatgccctcctcgacaactcttgccgtgaatatctgttcatc
tgtgattttttcatcgtgtctggcctggctgcacatgacctgttccacgctgtcatgggc
cgcacgctctccatgacgctgaaacacctggagtcctacctggccgactgctacgacgcc
attgctgttttcctctgtatccacattgttctccggttccgcaacattgcagcaaagagg
gacgtccctgccctggacaggtactgggagcaggtgcttgccttgctgtggcctcggttt
gagctgatcctggagatgaatgtccagagtgtccgcagcactgacccccagcgccttggg
ggactggacactcggccccactatatcacacgtcgctatgctgagttctcctctgcactt
gtcagcatcaaccagaccatccccaatgaacgcaccctgcaactgctgggacagctacag
gtggaggtggagaattttgtcctccgagtggctgcagagttctcttccaggaaggagcag
cttgtgtttctgatcaacaactatgacatgatgctgggtgtgctgatggagcgggctgca
gatgacagcaaagaggtggagagtttccagcagctgctcaatgctcggacacaggagttc
attgaagagttgctgtctccccccttcgggggtctggtggcgtttgtgaaggaggctgaa
gccttgattgagcgtgggcaggctgagcgcctccgaggagaggaagcccgagtcactcag
ctgatccgtggctttggtagttcctggaaggcttctgtggagtccctgagtcaggatgta
atgcggagttttaccaacttccgaaatggaaccagcatcatccagggggcgctgacccag
ctgatccagctgtaccaccgcttccaccgggtgctgtcccagccccagctccgcgcgctc
cctgccagggccgagctcatcaacatccatcacctcatggtggagctgaagaaacacaag
cccaacttctga
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