Arvicanthis niloticus (African grass rat): 117724544
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Entry
117724544 CDS
T08817
Symbol
Smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03082
ATP-dependent chromatin remodeling
anu03250
Viral life cycle - HIV-1
anu04714
Thermogenesis
anu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117724544 (Smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117724544 (Smarcb1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
117724544 (Smarcb1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
117724544 (Smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
anu01009
]
117724544 (Smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117724544 (Smarcb1)
03036 Chromosome and associated proteins [BR:
anu03036
]
117724544 (Smarcb1)
Protein phosphatases and associated proteins [BR:
anu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117724544 (Smarcb1)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117724544 (Smarcb1)
SWI/SNF complex
117724544 (Smarcb1)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117724544 (Smarcb1)
PBAF complex
117724544 (Smarcb1)
SWI/SNF complex
117724544 (Smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
117724544
NCBI-ProteinID:
XP_034380314
LinkDB
All DBs
Position
20:complement(40402694..40423497)
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgttgagcaagacctttgggcagaagcccgtcaagtttcagctggag
gacgacggggagttctacatgatcggctccgaggtgggaaactatctgcgtatgttccga
ggttctctgtacaagagatacccctcactctggcggcgactagccactgtggaagaaagg
aagaaaatagtggcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacaccaccctcgccaccagtgtgacactactgaaagcctcagaggtggaagagattctg
gacggcaatgatgagaagtacaaggctgtgtccatcagcaccgagcccccgacctacctc
agggaacagaaagccaagagaaacagccagtgggtccccaccctgcccaacagctcccac
catttggacgctgtgccatgttccaccaccatcaacaggaaccgtatggggcgggacaag
aagaggaccttccccttgtgctttgatgaccatgacccagctgtgatccatgagaatgca
tcacagcctgaggtgctggtacccatccggctagacatggagatagacgggcagaagctt
cgagatgcttttacctggaacatgaatgagaagctaatgacccctgagatgttttcagaa
atactttgtgatgacctggatttgaatccactgacgtttgtgccagctattgcctctgcc
attcgacagcagatcgagtcctaccccacagacagcatcctggaggaccaatctgaccaa
cgtgtcatcatcaagctgaacatccatgtggggaacatctccctggtggaccagtttgaa
tgggacatgtcagagaaagagaactccccagagaagtttgccctgaagctgtgctcggag
ttgggcttgggcggggagtttgtcaccaccattgcatacagcatccgaggacagctgagc
tggcaccagaagacctatgccttcagtgagaacccacttcccacagtggagattgccatc
cgaaataccggagatgctgaccagtggtgccccctgctggagacactgacggatgcggag
atggagaagaagatccgggatcaagacaggaacacaaggcgaatgaggcgtctggccaac
actgccccagcctggtga
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