Arvicanthis niloticus (African grass rat): 117724647
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Entry
117724647 CDS
T08817
Symbol
Prdm1
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117724647 (Prdm1)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117724647 (Prdm1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2HE
zf-C2H2_jaz
zf-met
STL11_N
Motif
Other DBs
NCBI-GeneID:
117724647
NCBI-ProteinID:
XP_034380465
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All DBs
Position
20:13570739..13610886
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AA seq
824 aa
AA seq
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MLDLLLEKRVGTTLAAPKCSSGSVKFQGLAETAGIMKMDMEDADMTLWTEADFEEKCTYI
VNDHPWDAGADGGTSVQAEASLPRNLLFKYAANNSKEVIGVVSKEYIPKGTRFGPLIGEV
YTNDTVPKNANRKYFWRIYSRQEFHHFIDGFNEEKSNWMRYVNPAHSAREQNLAACQNGM
NIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTAMNLTQTESNPKQYSSEKNELYP
KSVPKREYSVKEILKLDSNPSKRKDIYRSNISPFTSEKDIDGFLKNGSPDVPFYPRVVYP
IRAPLPEDFLKASLAYGMERPTYITHSPLPSSTTPSPPASSSPEQSLKSSSPHGSPGNTM
SPLAPGPPEHRDSYSYLNVSYGSEGLGSYPGYAPAPHLPPAFIPSYNAHYPKFLLPPYGI
SSNGLSTMNNINGINNFSLFPRLYPVYSNLLSGGNLPHPMLNPASLPSSLPTDGARRLLP
PEHPREVLVPAPHSAFSLTGAAASMKDESSPPSGSPTAGTAATSEHVVQPKATSSVMAAP
STDGAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGER
PFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQC
KVCPAKFTQFVHLKLHKRLHTRERPHKCAQCHKSYIHLCSLKVHLKGNCPMVPAAGLPLE
DLTRINEEIERFDISDNADRLEDMEDNVDVTSMVEKEILSMVRKEKEETGLKVSLQRNMG
NGLLSSGCNLYESPDLSLIPLPHNNPLPLVPVKVKQETVEPMDP
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgttggatcttctcttggaaaaacgtgtgggtacgaccttggctgcccccaagtgtagc
tccggctccgtgaagtttcaaggattggcagagacggctgggatcatgaaaatggatatg
gaggatgctgatatgactctgtggacagaggccgattttgaagagaagtgtacatacata
gtgaacgaccacccctgggatgccggcgccgacgggggtacttctgttcaagccgaggca
tcgttaccaaggaacctgcttttcaagtatgccgccaacaacagcaaagaggttattggt
gtggtgagtaaggaatacataccgaagggaacacggtttggacccctgatcggcgaagtt
tacaccaatgacacagttcccaagaatgccaacaggaagtatttttggcggatctattcc
agacaggagttccaccacttcattgatggctttaatgaggagaaaagcaactggatgcgc
tacgtgaatccagctcactctgcccgggagcaaaacctggctgcctgtcagaacgggatg
aacatctatttctacactattaagcctatccctgccaaccaggaacttcttgtgtggtat
tgtcgggactttgccgagagacttcactatccttatcctggagagctcacagcgatgaat
ctcacacaaacagaaagcaacccaaagcaatacagtagtgagaaaaatgagctttaccca
aagagtgtccccaagagagagtacagcgtgaaagaaatcctaaaactggactccaatccc
tccaaaaggaaggacatctaccgttctaacatttcacccttcacttcagaaaaggacata
gatggctttctgaaaaatgggagcccagacgtgcccttctacccacgggttgtttatccc
atccgggcgcctctgccagaagactttttgaaagcatccctggcctatgggatggagaga
cccacctacataactcacagccctcttccgtcttccacaactccaagtccccctgcaagc
agcagcccagagcagagtctcaagagctccagcccccacggcagcccggggaatacgatg
tcacccctggcaccaggtcccccagaacaccgggactcctattcctacttgaatgtttcc
tatggttccgagggcctgggctcctaccctggctatgcacctgccccccacctcccacca
gctttcatcccctcttacaatgctcactaccccaagtttctattgccaccctatggcatc
agttccaatggcttgagcaccatgaacaacatcaatggtatcaacaacttcagcctcttc
cccaggttgtatcctgtctacagtaacctccttagtgggggcaacctgcctcaccccatg
ctcaatccagcttccctaccaagctccctgcctactgatggagcccggaggctgctccca
ccagagcaccccagagaggtgcttgtcccagcaccccacagtgccttctcccttaccggg
gctgcagccagcatgaaggacgagagtagtccccccagtggatctccaacggcgggaact
gcagccacgtcagaacacgtggtacaacccaaagctacctcatcagtgatggcagccccc
agcactgacggagccatgaatctcattaaaaacaaacgaaacatgactggttacaagacc
cttccttaccccctgaagaagcagaatggcaagattaagtatgagtgcaatgtctgttcc
aagacgtttggtcagctctccaacctgaaggtccacctgagagtgcacagtggagaacgg
cctttcaagtgccagacctgcaacaagggttttactcagctcgcccacctgcagaaacac
tacctggtacacacaggagaaaagccacacgaatgccaggtctgccacaagagatttagc
agcacaagcaatctcaagacccaccttcgactgcattctggagaaaaaccttaccaatgt
aaagtgtgccctgccaagtttacacaatttgtgcacctgaagctgcacaagcgactgcat
acgcgggagcggcctcacaagtgtgcccagtgccacaagagctacatccatctctgcagc
ctcaaggtccacctgaagggcaactgccccatggtcccagccgccgggctgcctctggag
gatctgacccgaatcaatgaagaaatcgagaggtttgacattagcgacaatgctgaccgt
cttgaggacatggaggacaatgttgacgtgacctccatggtagagaaggagattctatct
atggtcagaaaagagaaagaagaaaccggtctgaaagtatctttgcaaagaaacatgggg
aacggactcctctcctcagggtgcaacctctatgagtcacccgacctgtccctcataccc
ttgcctcacaataacccactacctctggtgcctgtaaaggtcaaacaagaaacagttgaa
ccgatggatccttaa
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