Arvicanthis niloticus (African grass rat): 117724794
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Entry
117724794 CDS
T08817
Symbol
Cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117724794 (Cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117724794 (Cdc40)
Spliceosome [BR:
anu03041
]
Complex C
Other components
Step II factors
117724794 (Cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
117724794
NCBI-ProteinID:
XP_034380604
LinkDB
All DBs
Position
20:17032810..17081912
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AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGSRCPLPAADSLMHLTKSPSAKSSLTVAVDSAPEV
AVKEDLETGVHLDPAVREVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcagctctagctgcttcttatggctcgggttcggggtccgaatcg
gactcggacagtgagggcagtcggtgtccgctgccagccgcggactctctcatgcactta
accaaatcgccttcagccaagtcctctctgaccgtggcggtggactcggctccggaggtg
gcagttaaggaagatctggagactggagttcacctcgaccctgctgtcagagaagttcag
tacaatcccacctatgagaccatgtttgctcctgagtttggaccagaaaatccctttcga
acacagcaaatggctgcccctagaaatatgctttcggggtacgcagagccggcgcacatc
aacgacttcatgtttgaacagcagagaaggacatttgccacatacggctacgcactggac
ccttcgttagataatcaccaagtgtctgctaaatacattggctctgtggaagaggctgag
aagaatcaaggcttaactgtatttgaaaccggtcagaagaaaacagaaaagaggaaaaag
ttcaaagaaaacgatgcatctaatattgatggtttcttgggaccgtgggcaaaatatgtg
gatgaaaaagatgtggccaagccttcagaagaagaacaaaaggaattggatgaaatcaca
gcaaagaggcagaaaaaaggcaaacaggaagaagagaaacctggggaggagaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcaggtcctaccttcacatacctcaggat
gttggcgttaacctgcggtcgtctgtgccacctgaaaaatgttaccttcccaaaaaacaa
attcatgtgtggtctggacacacaaagggtgtcagtgccgtcaggctctttcctctctcc
ggacatttgctgttgtcttgctccatggactgtaaaattaagctatgggaagtttatgga
gaccggcgctgtctgagaacatttattggtcacagtaaagccgtgagagacatttgcttc
aacactgcggggacacagttcctcagtgcggcctacgacaggtacctgaaactctgggac
accgagacaggacagtgtatatcaagatttacaaaccgcaaagtaccctactgtgtcaag
ttcaatcccgatgaagataagcaaaatctctttgtggcaggaatgtctgataaaaagatc
gtccagtgggacattcgcagtggagagattgttcaggagtacgaccggcatctgggggct
gtcaacacgattgtctttgttgatgaaaaccggagatttgtgagcacatctgatgataaa
agcctgcgagtgtgggaatgggacatccctgtggacttcaagtacatagcagagcccagc
atgcactccatgcccgcagtgaccttgtctccaaacggaaaatggctagcatgccagtcg
atggataaccaaatcttaatttttggagcacagaacagattcagattaaataagaagaaa
atttttaagggccacatggtagcaggctatgcttgtcaggtagacttctcaccagacatg
agctatgtgatttcaggagatggaaatgggaaattaaacatttgggactggaagaccaca
aaactctacagtcgctttaaagcccatgataaagtgtgcataggtgcagtgtggcaccct
catgaaacatccaaggtcatcacgtgtggttgggatggcctcattaagttgtgggattaa
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