Arvicanthis niloticus (African grass rat): 143437900
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Entry
143437900 CDS
T08817
Symbol
Trim50
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM50 isoform X1
KO
K12024
tripartite motif-containing protein 50/73/74
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
anu04121
]
143437900 (Trim50)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
143437900 (Trim50)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
zf-RING_4
zf-Nse
U-box
Sina_RING
Prok-RING_4
zf_RING_Vps8_fungal
TRIM_CC
Baculo_IE-1
zf-RING_6
Serendipity_A
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
143437900
NCBI-ProteinID:
XP_076779284
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All DBs
Position
24:25616508..25633027
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AA seq
484 aa
AA seq
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MAWQLTVPELQDQLQCPICLEVFKEPLMLQCGHSYCKDCLDSMSQHLDSELRCPVCRQSV
DCSSSPPNVSLARVIDALRLPGDTEPTVCVHHRNPLSLFCEKDQEFICGLCGLLGSHQHH
RVTPVSTVYSRMKEELAGRISELKEEHRNVEEYIGKLVNNRTRIINESDVFSWVIRREFQ
ELHHLVDEEKARCLEGLEGHTRGLVASLDIQLEQAQGTQERLAQAKQVLEQFGNESHHEF
IRKFHSMASRAEVQQARPLEGVFSPISFKPALHQADIKLTVWKRLFRKVLPAPECLKLDP
ATAHPLLELSKGNTVVHCGLLSQRRASQPERFDYSTCVLASKGFSWGRHYWEVVVGSKSD
WRLGVIKGTASRKGKLNKSPEHGVWLIGLKEGRVYEAFGCPRLPLPVAGHPHRIGVYLHY
EQGELTFFDADRPDDLRTLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGHLT
LAQV
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcttggcagctgactgtgccggaactccaggaccagctgcagtgtcccatttgcctg
gaggtcttcaaagagcctctgatgctacagtgtggccactcctactgcaaggactgcctg
gactccatgtcccaacacctggactccgagctgcgctgtcctgtgtgtcgtcagtcagta
gactgcagcagctccccgcctaatgtctccctggcccgggtgatcgatgctctgaggctc
cctggggacacagagcccaccgtctgtgtgcaccaccgaaaccctctcagcctcttctgt
gagaaagaccaggaattcatctgtggtctctgtggcctgctgggctcccatcaacaccac
cgagttacaccagtctccaccgtctacagccgcatgaaggaagagcttgcaggccgcata
tctgagctgaaggaggaacacaggaacgtggaggagtacattggcaaactggtgaacaac
aggacccggattattaatgagtccgatgtcttcagctgggtgatccgaagagagttccag
gagttgcaccacctggtggatgaagagaaagcccgttgcctggaggggctagagggtcat
acgcgtggcctggtggcctccctggacatacagctggagcaggctcagggtactcaagaa
cgactggcccaggctaagcaggtgctggagcagtttgggaacgagagtcaccatgagttc
atccggaagttccactccatggcctccagggcagaggtccagcaggctcggcctttggaa
ggcgtcttcagcccgatctccttcaagccagctctccaccaggctgacatcaaactgacg
gtgtggaagagactcttccggaaggttctgcctgctccagaatgtctcaagctggaccca
gctactgcccaccctctcctggagctctctaagggcaacacagtggtgcattgtggcctc
ctttcccagagacgagccagccaacccgagcgctttgactacagcacctgtgtcctggcc
agcaagggcttctcctggggtcgccactactgggaagtggtggtggggagcaagagtgac
tggcgcttgggggtcatcaagggcacggccagccgcaaaggcaagctgaacaagtcccca
gagcacggtgtgtggctgattggcctgaaagagggtcgggtgtatgaggcgttcggctgc
ccacggctgccactgcccgtggctggccaccctcatcgcatcggagtctacttacactat
gagcagggggaactcacgttctttgatgcagaccgtcctgatgatctgaggacactctac
actttccaggctgacttccagggcaagctgtaccctatcctggacacatgttggcatgag
aggggcagcaactcactgcccatggtactgcccccgcccagtgggcctggccacctaaca
cttgcacaggtatag
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