Arvicanthis niloticus (African grass rat): 143438659
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Entry
143438659 CDS
T08817
Symbol
Sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
143438659 (Sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
143438659 (Sox17)
Transcription factors [BR:
anu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
143438659 (Sox17)
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Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
143438659
NCBI-ProteinID:
XP_076780555
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All DBs
Position
25:40113146..40120382
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AA seq
423 aa
AA seq
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MSSPDAGYASDDQSQPRSSQPAVMAGLGPCPWAESLSPLADVKVKGEVVASSSAPAGTSG
RTKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALAEPQAGALGPEGGRVAMDGLG
LPFPEPGYPAGPPLMSPHMGAHYRDCQGLGPSALDGYPLPTPDTSPLDSVEQDPAFFAAP
LPGDCPAAGAYTYAPVSDYAVPAEPPAGPMRVGPDPSGPTMPGILAPPSALHLYYGAMGS
PAASAGRGFHAPPQQPLQPQAPPPPPPPPPPQQHPAHGPGQPSPPPEALPCRDGTEPNQP
TELLGEVDRTEFEQYLHFVYKPEMGLPYQGHDCGVNLSDSHGAISSVVSDASSAVYYCNY
PDI
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccggatgcgggatacgccagtgacgaccagagccagccccggagctcgcag
cccgcggtgatggccgggttgggcccctgtccctgggccgagtccctgagccccctcgcg
gacgtaaaggtgaaaggcgaggtggtggcgagtagcagtgcgccagccgggacgtcgggc
cgaaccaaagcggagtctcgcattcggcggccgatgaacgcttttatggtatgggccaaa
gatgaacgcaagcggctggcacagcagaacccagatctgcacaacgcagagctaagcaag
atgctaggcaaatcctggaaggcgttgaccttggcggagaaacgacccttcgtggaagag
gccgagcggctgcgcgtgcagcacatgcaggaccaccccaactacaagtaccggccgcgg
cggcgcaagcaggtgaagcgcatgaagcgggtggagggaggcttcctgcacgctctcgcc
gagcctcaggccggcgcacttggtcccgaaggcggccgcgtggccatggatggcctgggt
ctacctttcccggagcccggctatccggccggcccaccgctgatgtccccgcacatgggc
gcccactaccgcgactgccagggactgggcccgtccgcgctcgacggctaccctctgccc
actccggacacatccccgctggatagcgtggagcaggacccggctttctttgcagccccg
ttgccaggggactgcccggcggctggagcctatacttatgctccggtctcggactacgcg
gttcccgcagagccacccgctggccccatgcgagtggggcccgacccctccggccctacg
atgccggggatcctggcgccccccagcgctctgcacctgtactacggcgcgatgggctcg
cccgcggcgagcgccgggcgcggtttccacgcgccgccccagcagccattgcaaccgcag
gcaccgccgccgccaccaccgccgccgccgccgcagcaacacccggcgcacggcccgggg
cagccttcgccccctccagaggctctgccctgccgagacggcacggaacccaaccagccc
actgagctcctaggggaggtggaccgcacggaattcgaacagtatctgcactttgtgtat
aagcccgagatgggtcttccctaccagggacatgactgcggtgtgaacctctcagacagc
cacggagccatttcctccgtggtgtccgacgctagctcagcggtttactactgcaactac
cctgacatttga
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