Arvicanthis niloticus (African grass rat): 143440336
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Entry
143440336 CDS
T08817
Symbol
Skic3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143440336 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
143440336 (Skic3)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
143440336 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_8
TPR_12
TPR_17
TPR_11
TPR_CcmH_CycH
CFAP70_TPR_C
CFAP70_mid_TPR
ANAPC3
ARM_TT21_C
TPR_9
TTC22_N
TPR_INTS8_3
Sel1
TPR_15
Fis1_TPR_C
CABIN1_N
ARM_TT21_2nd
TPR_30
BTAD
Retrotran_gag_2
VPS18_solenoid_1st
Motif
Other DBs
NCBI-GeneID:
143440336
NCBI-ProteinID:
XP_076783138
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All DBs
Position
29:2569575..2672528
Genome browser
AA seq
1563 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELDQPEQAQ
GAYKKAAELEPEQILAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDRQKWCDVCK
KLVDLYHQEQKHLEVARTWCRLIKTRQEDGADRQELYELWRKLSQLLAENIEDQNNETQQ
MLLTAFENALDLADNIPNEDHQVLYRNFIQCLSKFPHETTRLKKACEGMITIYPAVQYPL
EVICLYLIDSGSLTDEGHQYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVSHLTEGLK
ESPLCIAGWYHLAEAQVKMHRPKEAILSCNQALKTIDNLGASGGSLHQKNLCLRLKAEAL
LKLSDCASSEEAVRTLDQVSDVDNTPGLLVLQGLACLNTGAIDKATKIMEDLVASYPDLA
EAHALEAQVHFTKKDYVKAETSFQRALEKDAEVAEYHYQLGLTYWFMGEETRKDRTKALT
HFLKAARLDAHMGKVFCYLGHYYRDVAGDITRARGCYRKAFDLDDSDAESGAAAVDLSVE
LEDTETALAILTAVTQKASAGAAKWAWLRRGLYYLKAGQHSQAVSDLQAALRADPKDCNC
WESLGEAYLSRGGYTTALKSFTRASELNPDSTYSVFKVAAIQQILGRYSEAISQYQLIIK
KKEDYVPALKGLGECHLMLGKAALVDFLDGKAVDYVEQALGYFTRALQHRPDVSCLWKLV
GDACTCLHPVSPSKVHVHVLGALLGQQKGQEVLKKDELLCLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAEMGSSTDDLTELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYRGV
GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIG
QALIAERVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AVPAAQGVLCKYVERIPNYAPAFTMLGYLNEHLQLKREAAEAYQRATALLNSAEDQHTYN
VTVRNWGRLLCSIGDCDKAMQAFKSTPLAELEDIIGFALALFMKGLYKESSTAYEKALAV
CKSEQDKAHILTAMAITEYKQGKMNTAKSLLFKCSILKEPTAESLQALCALGLAMQDATL
SKAALNELLKHIKHKNDYHRCLLTSAVYALQGRSVAVQRQAAKAVHSNPADPALWSLLSR
IVAQYTQRSAKGGAVAGTAAHILDSSHGKKALLYTAVNQLAMGNSTAEDGKSAALKTIQK
AAFLSPDDPAVWAGLMAACHADDKLALLRNTQPKRVDLHLALQSAVSASLKDKEILQNYN
QSLEKWSFSQAVTGLIDTGKISEAESLCTKNLKSNPDQPAVILLLRQVQCKSLLESQKPL
PDAVLEELQKAVMSNSASVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGNWSGKLS
SLLKLALLALEVCMANVSGDHWSSLVQEATSEALKICFSPLAVFLQALLQFSRKMGARET
RRLLERVVYQTGYPSSIVSTARWYLLRHLYAKDDHELIDVLVRNAETHGDKRMLELNQKL
SAQ
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaagactgctctaaaaagtgcaagagatgcaatcagaaacaaa
gagtacaaagaagctttgaaacattgcaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggcgttgctgcagctgagctagaccagcccgagcaggcccag
ggtgcctataagaaagctgctgagctagaaccagagcagatactcgcttggcaggggcta
gcaagtttgtatgagaagtgtaatcacataaatgctaaggatgatttacctggtgtttac
caaaagctgttggatctctatgaaagtgttgacagacagaagtggtgtgacgtgtgtaag
aaactcgtggatctgtatcaccaggagcagaaacacctagaggtggctcggacatggtgt
agattgataaagacacggcaggaagatggagcagacagacaagagctttatgaactgtgg
agaaaattgagtcagttgctggctgagaatatagaagatcagaataatgagacccagcag
atgcttttaactgcatttgagaatgcactggacttagcagataacattcccaatgaagat
caccaagtactttataggaacttcattcagtgtttgtctaaatttcctcatgagacgact
aggttgaagaaggcctgtgaaggaatgataactatctatcctgccgtacaatacccacta
gaagtgatttgtttgtacttaattgactcagggagcctgacggatgagggacaccagtat
tgttgtaaactagtggaaatgaattcaaaaagtggtccaggccttattggtttaggcatt
atagctttacaagacaagaagtatgaagatgctgttagtcatctaacagaaggcttgaag
gaaagccctctctgcatagctgggtggtatcatctagcagaagcccaagtcaaaatgcac
agacctaaggaagctattctttcttgcaatcaagctctgaagaccatagataacctcggt
gcatcaggtggcagtcttcatcagaagaatctttgtcttcgtctgaaagcagaggctttg
cttaaactctcagattgtgcatcttcggaggaggcagttcgtacccttgatcaggtttct
gatgtagataataccccaggactgctggttctccaaggcctggcctgtctgaacacaggt
gctatagacaaggctacaaagatcatggaagaccttgtagcctcttaccctgatctagct
gaggctcacgctcttgaggcccaggttcactttactaagaaggactatgtgaaagcagaa
acgagtttccagagagcgcttgagaaagatgcggaagttgccgagtatcattaccagctt
gggctgacatactggttcatgggtgaggagacaagaaaagacagaacaaaggctcttacc
cacttcctgaaggctgcgagactggatgcacacatgggtaaagttttctgctacctaggc
cattattaccgagatgtggctggagacataaccagagcccgagggtgttacaggaaagcg
tttgacttagatgacagtgatgctgagtctggggctgctgcagttgacctgagcgtggag
cttgaagacacggaaactgctttagctatcttgacagcagtaactcagaaggcaagtgcc
ggagcagcgaagtgggcgtggctgaggagaggactgtactatttgaaagccggtcaacat
tctcaagcagtgtctgatttacaggcagcattaagggcagacccaaaggactgcaattgc
tgggagtcattaggagaggcgtacttgagcagaggtggctacacaacagccttgaagtct
ttcacaagagccagtgagctcaacccagactctacatacagtgtgtttaaagtggcagcg
atacagcaaatcctcggcagatattcagaggccatttcacagtatcagctgatcattaaa
aagaaagaagattatgtgcctgccttaaaaggtttgggtgagtgccacctgatgctgggg
aaggcggccttagtggattttctggacggaaaagctgtggactatgtggaacaagcgctg
gggtatttcacccgggccctgcagcatcgacctgatgtatcttgcctttggaagctcgtg
ggagatgcctgcacctgtctgcaccctgtttcaccatctaaagtgcatgttcatgtctta
ggagcccttctcggccagcagaagggacaagaagtcttaaagaaagatgagctcctgtgt
cttggaggaaggtgttatggtcgtgcattaaaattgatgtctacatctaatacatggtgt
gatcttggaattaattattaccgtcaagcacaacatctagcagaaatgggcagcagcacg
gatgatcttactgagctactggagaaatctttgcattgtctgaaaaaggcggtgaggctg
gacagtaataatcacttatactggaacgctcttggtgtggttgcatgttaccgtggagtt
gggaattatgctcttgctcagcactgtttcatcaaatcaatccaggcagaacaaattaat
gccgccgcatggaccaacttaggagtgttataccttgcgactgaaaacatcgagcaagcc
catgaagcattcaaaatggctcagtcccttgatccatcttatttattgtgctggattgga
caggctcttattgcagagagagttggaagttatgataccatggatctcttcaggcacact
acagagctcagtatgcatactgaaggagcaataggttatgcatattgggtttgtacaaca
ttacaagacaaaagcaacagagaaacagagctataccagtacaacatcctccagatgaat
gctgtccccgcggcacagggcgttctgtgtaaatatgtagaacgaattccaaattacgct
ccagctttcaccatgttgggttatttaaatgagcatctgcagttgaaaagggaagcagca
gaggcttaccaaagggcaactgcactgttaaattctgctgaagaccaacatacttacaat
gttacagtaagaaactggggcagattgttatgctccattggtgactgtgataaagccatg
caggcctttaagtccacgccccttgcagagctcgaggacatcatagggtttgcactcgcg
ttgtttatgaagggcctgtacaaggaaagcagcacagcctatgagaaagccttggctgtt
tgtaaatcagagcaagacaaagctcacatcttgacagctatggcaataacggaatataaa
caaggaaaaatgaatacagccaagtcgttactcttcaaatgctctattttaaaggaacca
actgcagaaagtcttcaagcactgtgtgctctagggttggcaatgcaggatgccacactg
tcaaaagcagcactgaatgagttactcaagcatatcaaacacaagaacgattatcacagg
tgccttctgacgtcagcagtgtacgcactccagggccgcagtgtggcagtgcaaagacaa
gcagccaaggctgtgcacagtaaccctgctgaccctgctctttggtctttgctatctcga
atcgttgctcagtacacccagcggagtgcaaagggaggtgctgtagctggcactgcggct
catattctggattcgagtcatggaaagaaggccttgttgtatactgcagtgaaccagttg
gccatgggaaacagtacagcagaggatggaaaaagtgctgctctgaagaccattcagaag
gcagccttcctttctccagatgaccctgctgtctgggctgggctgatggcagcctgccat
gcagatgataaactggctttgctccgtaacactcagccaaagagggtagatttgcacttg
gcattgcagtctgctgtttctgcttcacttaaggacaaagaaattttacaaaattacaac
cagtcacttgaaaagtggtctttctcacaagctgtcactggtctgattgacacaggaaaa
atatctgaagctgaatctctgtgcactaagaatttaaaaagtaaccctgatcagccagct
gttatcttactgttgagacaagttcagtgtaaatcactcctggagtcacagaagcccctc
ccagatgctgttctggaagaactgcaaaaagcagtcatgtccaactcagcctccgtcccg
gcatggcagtggttggcccaggtatatcagtctcaaggaatgatgggtgctgcagagatg
tgttacagaaagagtctccaagtggcatcccagcagggcaactggagtgggaagctctca
agtctgttgaagctagcccttcttgccttggaagtgtgcatggctaatgtttcaggtgat
cactggtcatccttggttcaagaagccacaagtgaggccttgaagatttgctttagtccg
ctggctgtcttcttgcaagcattgttacagttcagccgtaagatgggagcaagagagaca
cggcggcttttggaaagagtagtgtaccagaccggataccccagctcaattgtatcaact
gctcgttggtacctcttaagacacctctatgcaaaagatgaccatgagctgattgatgtg
ttggtgaggaatgcggagactcatggtgataaaagaatgttggaactgaatcaaaagctg
tcggcacagtga
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integrated database retrieval system
