Amycolatopsis nalaikhensis: QP939_21495
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Entry
QP939_21495 CDS
T10497
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
anw Amycolatopsis nalaikhensis
Pathway
anw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
anw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QP939_21495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anw03400
]
QP939_21495 (mfd)
Enzymes [BR:
anw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QP939_21495 (mfd)
DNA repair and recombination proteins [BR:
anw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QP939_21495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WIV62085
LinkDB
All DBs
Position
4338289..4341843
Genome browser
AA seq
1184 aa
AA seq
DB search
MSGLLTAILPDPALRGVVERAGAPLLELQGPIAARQLVAAALAADAGAAKPVLAVTATGR
EADELTASLSALLGKQRVADFPSWETLPHERLSPRADTVGRRLEVLHRLKTGDDDLRVVV
ATVRSLIQPMAPGLGSLAPVDLVVGEEQSFEGLLERLVELAYTRVDMVEKRGEFAVRGGI
LDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSIPGEIPRVTAPPCRELLLTAPVKEKA
AELAKTYEADAHLAEMLTKLADGIPVEGMEALIPVLCEGELELLTDAMPVGTHVLLTDPE
KIRARAADLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRGLDEIASHAQDTKRAWWTLT
QLTSEDPDVYRVSVEAAPGYRGELERAMTDLRAHTAAGGTAVLVVAGQGTAARAVEQLTG
ADVPATQAPDGLANAPAPGMVTVTCGGLTDGFVSPERALVVLSEADLTGRGAGAGTSTKD
LNTKMPSRRRNAVDPLALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEYASSKRG
HPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKEIAAELVQLYAAR
QAAPGHAFGPDTPWQHELEDAFPFTETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKT
EIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFHERMRSFPVKIKGLSRFTNKAESDAI
LEQLASGDVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMS
ATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYV
HNRVSSIEKAARRIRELVPEARVVTAHGQMNEEKLEKIIQGFWENEYDVLVCTTIVETGL
DISNANTLLVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQ
NTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDAFRRHAGAEPT
EEEELAEVRVDLPIDAHIPHDYVPGERLRLEAYRKIAAAPDTEGLDAVREELIDRYGQPP
APVNRLLAVARFRHTCREAGVTEVAVQGNTIRFAPLPLADSQMVRLKRLYPKAMFKAVTN
TVSVPKPTEGPAGGRIGAPTLRDEELLDWCTKLLTQLTKKPATV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggactcctcaccgccatccttcccgacccggccctgcgcggcgtggtcgagcgc
gccggcgcgccgctgctcgagctgcagggcccgatcgccgctcggcagctcgtcgcggcc
gccctcgccgccgatgcgggcgcggccaagcccgtcctcgctgtcaccgccaccggccgg
gaggccgacgagctgaccgcgtcgctcagcgccctgctgggcaagcagagagtcgccgac
ttcccgagctgggagaccctgccgcacgagcgcctctcgccgcgcgccgacaccgtcggg
cgccgcctggaggtgctgcaccggctcaagaccggggacgacgacctgcgcgtggtcgtc
gccaccgtccgcagcctcatccagcccatggcgcccgggctcgggtcgctcgccccggtc
gacctcgtcgtcggcgaagagcagagcttcgaaggcctcctcgaacggctcgtcgagctg
gcctacacccgcgtcgacatggtcgagaagcgcggcgagttcgccgtccgcggcggcatc
ctcgacctcttcggcccgaccgcgcagcaccccgtccgcgtcgagttctggggcgacgag
gtcagcgagatccgcgcgttcgccgtctccgaccagcggtcgatccccggcgagattccg
cgcgtcacggcgccgccgtgccgggagctgctgctcaccgcgccggtcaaggagaaggcc
gcggagctggcgaagacctacgaggccgacgcccacctggccgagatgctcaccaagctc
gccgacggcatccccgtcgagggcatggaagcccttatcccggtgctctgcgaaggcgag
ctggagctgctcaccgacgcgatgccggtcggcacgcacgtcctgctcaccgacccggag
aagattcgcgcccgcgccgccgacctcgtccgcaccggccaggagttcctcgaagcgtcc
tggacgacggccgcggcgggcggccaggccccgatcgacctcggcgcgtccgcctaccgc
ggcctcgacgagatcgcctcccacgcgcaggacaccaagcgcgcctggtggacgctcacc
cagctgaccagcgaagacccggacgtctaccgcgtctcggtcgaggccgcgcccggctac
cgcggcgagctcgagcgtgcgatgacggacctgcgcgcgcacacggcggcgggcggcacg
gcggtgctcgtcgtcgccggtcagggcaccgcggcgcgcgcggtcgagcagctcaccggc
gccgacgtcccggccacccaggcccccgacggcctggcgaacgcaccggccccgggcatg
gtcacggtcacctgcggcggcctcaccgacggcttcgtctcgccggagcgtgccctggtc
gtgctgagcgaggcggacctcaccggtcgcggcgcgggcgccggaacgtccacaaaggac
ttgaacaccaagatgccgtcccggcggcgcaacgcggtcgacccgctcgcgttgaaggcg
ggcgactacgtcgtgcacgaccagcacggcatcggccggttcgtcgagatggtccagcgg
acggtcgccggcgcgacgcgcgagtacctcctgctggagtacgcgtcgtcgaagcgcggc
cacccgggcgaccggctgttcgtccccaccgaccagctcgacgaggtctcccgctacgtc
ggcggtgagctgcccacgctcaacaagctcggcggctccgactggaagaacaccaaggcc
aaggccaagaaggcggtcaaggagatcgcggccgagctggtccagctgtacgcggcacgc
caggccgcgcccggccacgcgttcggcccggacacgccgtggcagcacgagctggaagac
gcgttcccgttcaccgagaccaacgaccagctcgccgccatcgacgaggtcaaggcggac
atggagcgcggcgtcccgatggaccgcgtcatctgcggcgacgtcggttacggcaagacg
gagatcgccgtccgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtcctc
gtcccgacgacgctgctggcccagcagcacctgaacaccttccacgagcggatgcgctcg
ttcccggtgaagatcaagggtctcagccggttcacgaacaaggcggagtcggacgcgatc
ctcgagcagctcgcgagcggcgacgtcgacatcgtcatcggcacgcaccggctgctgcag
acgggcatccgctacaaggacctcggcctcgtgatcgtcgacgaggagcagcggttcggc
gtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtcgacgtgctcacgatgtcg
gcgacgccgatcccgcgcacgctggagatgtcgctggcgggcatccgcgagatgtcgacg
atcctgaccccgccggaggaccgccacccgatcctgacgtacgtcggcgcgtacgacgac
aagcaggtcggcgcggccatccggcgcgagctgctgcgtgacggccaggtcttctacgtc
cacaaccgcgtgtcgtcgatcgagaaggcggcgcggcggatccgcgagctggtgccggag
gcgcgggtcgtgacggcgcacggccagatgaacgaggagaagctcgagaagatcatccag
ggcttctgggagaacgaatacgacgtcctcgtctgcacgacgatcgtcgagaccggcctg
gacatctcgaacgcgaacacgctcctggtcgaacgcggcgacctgctggggttggctcag
ctgcaccagctgcgcggccgcgtcggacgtgggcgtgagcgcgggtacgcgtacttcctg
tacccgccggaggccccgctgacggagaccgcgcacgaccgcctggcgacgatcgcccag
aacaccgagctgggcgcgggcatggcggtcgcgatgaaggacctggaaatccgcggcgcg
ggcaacattctcggagcggagcagtccgggcacatcgcgggcgtcggcttcgatctgtat
gtgcggttggtgggcgaggcggtcgacgcgttccggcggcacgcgggagccgagccgacg
gaggaagaggagctggcggaggtccgcgtcgacctcccgatcgacgcccacatcccgcac
gactacgtgccgggggagaggctgcggctggaggcgtaccgcaagatcgcggcggccccg
gacacggaaggactggacgcggtccgcgaagagctgatcgaccgctacggccagcccccg
gcaccggtgaaccggctgctggcggtggcccggttccgccacacgtgccgcgaggcgggc
gtgacggaggtggcggtccagggcaacacgatccgcttcgcgccgttgccgctggctgat
tcgcagatggtgcggttgaagcggctgtacccgaaggcgatgttcaaggcggtgacgaac
acggtgtcggtgccgaagcccacggagggcccggcgggcggccgcatcggcgcgccgacg
ctgcgggacgaagagctgctggactggtgcacgaagttgctgacgcagctgacgaagaag
cccgccacggtgtag
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