Amycolatopsis nalaikhensis: QP939_31085
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Entry
QP939_31085 CDS
T10497
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
anw Amycolatopsis nalaikhensis
Pathway
anw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QP939_31085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anw03019
]
QP939_31085
Messenger RNA biogenesis [BR:
anw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QP939_31085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF2201
Motif
Other DBs
NCBI-ProteinID:
WIV53340
UniProt:
A0ABY8XD84
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Position
6339209..6340906
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AA seq
565 aa
AA seq
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MSSLPPGPGPTNAPPALPEGALRVVALGGIGEVGRNMTVFEFGGRLLIVDCGVLFPEDDQ
PGVDLILPDFRAIEDRLDDIDGLVLTHGHEDHIGAVPFLLRLRPDLPIYGSKFTNALLAA
KAKEHRQRPNLIQVREGERRDVGVFNLEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLD
QLPLDGRLTDLAGFSRLGDEGVDLFCVDSTNAEVPGFVMPERDIGPVLDDVVRKVDQRVI
VACFASHVHRVQQVLDAAQRHGRRIAFVGRSMVRNMGIAADLGLLNVPEGLLVDLDQASN
LPESKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSMIPGNETAVFGVVNG
LTRLGANVVHQGNAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWKHLRANGELAIRTG
VAPENVVIAEDGVVVDLVDGKASRTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFI
AINVAVDSNTGRAVSSPTVAGRGFSDDPKALDAVVPLVEMELARTEAEGITDTHRIAQAV
RRVVGRWVADTYRRRPMIVPTVIPV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcacttcccccaggtccaggccccaccaacgccccgcccgcactgcccgaggga
gccctgcgcgtcgtcgcgctgggcggcatcggcgaagtcgggcgcaacatgaccgtcttc
gagttcggcggacggctgctcatcgtcgactgcggggtgctcttccccgaggacgaccag
cccggcgtcgacctgatcctgcccgacttccgcgcgatcgaggaccgcctcgacgacatc
gacggcctggtgctcacccacgggcacgaggaccacatcggtgccgtcccgttcctcctg
cgcctgcggccggacctgccgatctacggctccaagttcaccaacgccctgctcgcggcg
aaggccaaggagcaccggcagcgaccgaacctgatccaggtccgcgagggcgagcgccgc
gacgtcggcgtgttcaacctcgagttcttcgcggtcaaccactccatcccggacgcgctc
gcggtcgcgatccgcaccccggcgggcgtggtcctgcacaccggcgacatcaagctcgac
cagctcccgctcgacgggcgcctcaccgacctggccgggttctcccggctgggcgacgag
ggcgtcgacctgttctgcgtcgactcgaccaacgccgaggtgcccgggttcgtcatgccc
gagcgcgacatcggcccggtgctcgacgacgtcgtccgcaaggtcgaccagcgcgtgatc
gtggcctgcttcgccagccacgtgcaccgcgtccagcaggtgctcgacgccgcgcagcga
cacggccgccggatcgcgttcgtcggccggtcgatggtccgcaacatggggatcgcggcc
gacctcggcctgctcaacgtgccggagggcctgctggtcgacctcgaccaggcgagcaat
ctgcccgaaagcaaggtcctgttcgtctcgacgggttcgcagggcgagccgctctcggcg
ctgtcgcggatggcgcgcggcgagcaccggcagatctcgatccgcgcgggcgacacggtc
gtcctggccagctcgatgatcccgggcaacgagaccgcggtgttcggcgtggtcaacggc
ctgacccggctcggcgcgaacgtcgtccaccagggcaacgcgaaggtccacgtgtccggc
cacgcgtcggcgggggagctgctgtacctgtacaacgcggtgcgcccgagcaacgtcatg
ccggtgcacggcgagtggaagcacctgcgcgcgaacggcgagctggcgatccgcacgggt
gtcgccccggagaacgtggtcatcgccgaggacggcgtggtcgtcgacctggtcgacggc
aaggcgtcccgcaccggccgcgtcgaggtcgggcacgtgtacgtcgacggcctctcggtc
ggcgacgtcggcgagtcgacgttgtcggaccggctggtcctgggcgagggcgggttcatc
gcgatcaacgtcgcggtggactcgaacaccggccgcgcggtcagcagcccgacggtggcg
ggccgcggcttctccgacgacccgaaggcgctcgacgccgtggtgccgctggtggagatg
gagctggcgcgcaccgaggccgagggcatcacggacacgcaccggatcgcccaggcggtc
cgccgggtggtgggccgctgggtggcggacacctaccgccgccgcccgatgatcgtcccg
acggtcatcccggtctga
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