KEGG   Amycolatopsis nalaikhensis: QP939_31085
Entry
QP939_31085       CDS       T10497                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
anw  Amycolatopsis nalaikhensis
Pathway
anw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:anw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QP939_31085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:anw03019]
    QP939_31085
Messenger RNA biogenesis [BR:anw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     QP939_31085
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 DUF2201
Other DBs
NCBI-ProteinID: WIV53340
UniProt: A0ABY8XD84
LinkDB
Position
6339209..6340906
AA seq 565 aa
MSSLPPGPGPTNAPPALPEGALRVVALGGIGEVGRNMTVFEFGGRLLIVDCGVLFPEDDQ
PGVDLILPDFRAIEDRLDDIDGLVLTHGHEDHIGAVPFLLRLRPDLPIYGSKFTNALLAA
KAKEHRQRPNLIQVREGERRDVGVFNLEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLD
QLPLDGRLTDLAGFSRLGDEGVDLFCVDSTNAEVPGFVMPERDIGPVLDDVVRKVDQRVI
VACFASHVHRVQQVLDAAQRHGRRIAFVGRSMVRNMGIAADLGLLNVPEGLLVDLDQASN
LPESKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSMIPGNETAVFGVVNG
LTRLGANVVHQGNAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWKHLRANGELAIRTG
VAPENVVIAEDGVVVDLVDGKASRTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFI
AINVAVDSNTGRAVSSPTVAGRGFSDDPKALDAVVPLVEMELARTEAEGITDTHRIAQAV
RRVVGRWVADTYRRRPMIVPTVIPV
NT seq 1698 nt   +upstreamnt  +downstreamnt
gtgagctcacttcccccaggtccaggccccaccaacgccccgcccgcactgcccgaggga
gccctgcgcgtcgtcgcgctgggcggcatcggcgaagtcgggcgcaacatgaccgtcttc
gagttcggcggacggctgctcatcgtcgactgcggggtgctcttccccgaggacgaccag
cccggcgtcgacctgatcctgcccgacttccgcgcgatcgaggaccgcctcgacgacatc
gacggcctggtgctcacccacgggcacgaggaccacatcggtgccgtcccgttcctcctg
cgcctgcggccggacctgccgatctacggctccaagttcaccaacgccctgctcgcggcg
aaggccaaggagcaccggcagcgaccgaacctgatccaggtccgcgagggcgagcgccgc
gacgtcggcgtgttcaacctcgagttcttcgcggtcaaccactccatcccggacgcgctc
gcggtcgcgatccgcaccccggcgggcgtggtcctgcacaccggcgacatcaagctcgac
cagctcccgctcgacgggcgcctcaccgacctggccgggttctcccggctgggcgacgag
ggcgtcgacctgttctgcgtcgactcgaccaacgccgaggtgcccgggttcgtcatgccc
gagcgcgacatcggcccggtgctcgacgacgtcgtccgcaaggtcgaccagcgcgtgatc
gtggcctgcttcgccagccacgtgcaccgcgtccagcaggtgctcgacgccgcgcagcga
cacggccgccggatcgcgttcgtcggccggtcgatggtccgcaacatggggatcgcggcc
gacctcggcctgctcaacgtgccggagggcctgctggtcgacctcgaccaggcgagcaat
ctgcccgaaagcaaggtcctgttcgtctcgacgggttcgcagggcgagccgctctcggcg
ctgtcgcggatggcgcgcggcgagcaccggcagatctcgatccgcgcgggcgacacggtc
gtcctggccagctcgatgatcccgggcaacgagaccgcggtgttcggcgtggtcaacggc
ctgacccggctcggcgcgaacgtcgtccaccagggcaacgcgaaggtccacgtgtccggc
cacgcgtcggcgggggagctgctgtacctgtacaacgcggtgcgcccgagcaacgtcatg
ccggtgcacggcgagtggaagcacctgcgcgcgaacggcgagctggcgatccgcacgggt
gtcgccccggagaacgtggtcatcgccgaggacggcgtggtcgtcgacctggtcgacggc
aaggcgtcccgcaccggccgcgtcgaggtcgggcacgtgtacgtcgacggcctctcggtc
ggcgacgtcggcgagtcgacgttgtcggaccggctggtcctgggcgagggcgggttcatc
gcgatcaacgtcgcggtggactcgaacaccggccgcgcggtcagcagcccgacggtggcg
ggccgcggcttctccgacgacccgaaggcgctcgacgccgtggtgccgctggtggagatg
gagctggcgcgcaccgaggccgagggcatcacggacacgcaccggatcgcccaggcggtc
cgccgggtggtgggccgctgggtggcggacacctaccgccgccgcccgatgatcgtcccg
acggtcatcccggtctga

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