Anaerococcus sp. AH8042_DFU013_CI05: ACKRLN_03400
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Entry
ACKRLN_03400 CDS
T11013
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
anz Anaerococcus sp. AH8042_DFU013_CI05
Pathway
anz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
anz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACKRLN_03400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anz03400
]
ACKRLN_03400 (mfd)
Enzymes [BR:
anz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACKRLN_03400 (mfd)
DNA repair and recombination proteins [BR:
anz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACKRLN_03400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
IstB_IS21
UB2H
Gp18_dom_I
DUF5472
Motif
Other DBs
NCBI-ProteinID:
XOU00273
LinkDB
All DBs
Position
complement(630904..634386)
Genome browser
AA seq
1160 aa
AA seq
DB search
MNQLIKLLENTEQLNKIRENYLKDSPIYLYGLTEGIKAHLILSLFDSLEKNVVFITENEK
KAKDIQTNINNLYDIARFYPSREINYYNIRTVDEDTNTSRMENLISQVKNERLITVTTMD
AILNKLTPLDKFNNSFVKISSEDIVDVEEFIKTLINLNYNPTSLVENKGEYAKRGSIIDF
WPIDYENPVRLELFDDEIDSIRIFDQKNQRTIEKIDEVTISPLNELIYEESDFEYVLKNI
EKDVSKLEKNIKDSNDQKLIDKYRQIQSYIKDTMYVANWDLINPYRDTNFETYLDYLSKD
TIFILDDASRIYDNHKEFEKNFLEDVTIQRDRGEVFNAFTNLLVNVEQTYEKIETHPIIN
LTSILKRTKFFNPKLLLEFKTIESEHFNRKINTLAEALKNQKENAKTLIFAGNNENKNNL
LSALRENDILDISDEFSTRITVTNDVASEGYYLPEYDLFLFTEKEIYGTNKRKSKKKIKN
KMSSTDIINYSDLDIGDYVVHENNGIGVYNGLEQIEVNNIQKDFIVINYKGNDKVYVPID
QMNLVSKYIGNKGEKPRLSTLGSPTWSKAKARAKKAVDEIADDLVKLYAQRSKEVGHAFS
ADTPWQKEFEESFPYEETYSQLRSINEIKDDMEKDKPMDRLLTGDVGYGKTEVALRAAFK
AIVDGYQVAFLVPTTILASQHYETMKERFKEFPIEARLLSRFNSKKDQDQTIKDLKSGKV
DIVIGTHRVLSSDVKFKNLGLLIIDEEQRFGVKHKEKLKQLKTSLDVLTLSATPIPRTLQ
MSLAGIRDLSTLDEPPEERLPVNTYVLEYDENIIKAAIDRELARNGQVYFVYNRVHNIDL
LYNHIKELIPEARIEIIHGKLTPKQIETIMNDFISGEIDILLSTTIIETGMDIANVNTII
IYDADMMGLSQLYQLKGRIGRGNRSSYAYFTYRQGKVLSEISEKRLKSIRDFSDFGSGYK
IAMKDLELRGAGNLLGESQSGHVEAVGYDLYVKYLQEAVEKASGKEVDVKKKSDVYIDIK
VNAYIPSTYISDQSQKIEMYTRIANIENIEDYNILVEDLIDIYGDIPLMVDNIMYVSLIK
SLAEGLGFKEIREQNAYINLRFSNREEFTFDELKEISESYKGDMKLDLSKNPAFKIPATN
TKLIDTYDLLEIISSIRSKK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaattaataaaattattagaaaatacagaacaattaaataaaattagggaaaat
tacttaaaagattctcctatatatttgtacggacttacagaagggataaaagctcattta
attttatccctttttgatagtttagaaaaaaatgtagtatttataactgagaatgaaaaa
aaagctaaagatatccagacaaatataaacaacctttatgatattgcaagattctatcca
tctagagaaataaattactataatatacgaactgtagatgaagatacaaatacatccaga
atggagaacttaattagccaagtaaaaaatgaaagactaattacagttactactatggat
gcaattttaaataaattaacacctttagataaatttaataacagttttgttaaaattagt
agcgaggatattgtagatgtagaagaatttataaaaacactcataaatttaaattacaat
cctacaagccttgttgaaaataaaggagaatacgcaaagcgtgggtccattatagatttt
tggcctatagattatgaaaatccagtaagactagaactttttgatgatgagatagattct
ataaggatttttgatcaaaagaatcaacgtacaatcgaaaaaatagatgaagtaacaatc
tcacctttaaatgagttaatatacgaagaatctgattttgaatatgtattaaaaaatatc
gaaaaagatgtttcaaaattagaaaaaaatataaaagactcaaatgatcaaaagctgata
gataagtacaggcaaatacaatcttacataaaagatactatgtatgtagctaactgggat
ttaataaatccatatcgagatacaaattttgaaacttacttagattacttatctaaagat
acgatttttattctagatgatgcatccagaatatatgataatcataaagaatttgaaaag
aattttctagaagatgttactatccaaagagataggggcgaggtatttaatgcatttact
aatttattagtaaatgttgagcaaacttatgaaaagatagaaactcatccaatcattaac
ttaacatcaatcttaaaaagaacaaaattttttaatcctaaactattattggaatttaaa
accatagaatcagaacactttaatagaaaaataaatactctagcagaggctttaaaaaac
cagaaagaaaatgctaaaaccttaatttttgctggaaataatgagaataaaaacaatcta
ttaagtgccttacgtgaaaatgatatcttagatatttctgatgaatttagtacaagaata
acagtaacaaatgatgttgcaagtgaaggttactatttaccggaatatgatttatttctt
tttactgaaaaagaaatctatggtactaacaagagaaaatcaaaaaagaagattaaaaat
aaaatgtcttctacagatatcatcaattactctgatttagatattggtgattatgtagtc
cacgaaaataatggtattggtgtttataacggtcttgaacaaattgaagtaaacaatata
caaaaagattttatcgttataaattataagggtaatgataaagtttatgtaccgatagac
caaatgaatctggttagcaaatatattggtaataagggtgaaaagccaagactgtcaact
ctagggtctcccacatggtcaaaggccaaggcccgtgctaaaaaagctgtagatgaaatt
gcagatgacttagtaaaattatatgcccaaagaagtaaagaagttggacatgctttttca
gcagatacaccttggcaaaaggaatttgaagaatcttttccatatgaagaaacctacagc
cagttaagaagtattaacgaaattaaagatgatatggaaaaagataaaccaatggatcgt
cttttaactggagatgttggttatggtaaaactgaagtagcacttagggctgcatttaag
gctatagttgatggataccaagtagcatttttagtgccaacaactatactagcaagtcag
cactatgagactatgaaagaaagatttaaagaatttccaatagaagcaaggctattatca
cgctttaattctaaaaaagatcaagatcaaactataaaagatcttaaatctggaaaagtt
gatatagtaataggtactcatagagttttatccagtgatgttaaatttaaaaatcttggt
ctattgattatagatgaagaacaaagatttggtgtaaagcataaagaaaaattaaagcaa
cttaaaacaagccttgatgttttaacattatcggctacaccaattcctagaacacttcaa
atgtcacttgctggtattagagacctttcaaccttagatgaaccaccagaagaaagattg
ccagtaaatacttatgttttagaatatgatgagaatattataaaagctgctatcgatagg
gaactagctagaaatggacaagtatattttgtttataatcgtgtccataatatagattta
ctatataatcatataaaagaattgattcctgaagctaggattgagataatccatggtaag
ctaactccaaaacaaatcgaaactataatgaacgactttataagtggagagattgatatt
ttactatcaactacaattatagaaactggaatggatatagcaaatgtaaatacaattata
atttatgatgctgacatgatgggtctttctcagctttatcagctaaagggtcgcattgga
agaggaaatagatcttcatatgcatattttacttataggcaaggtaaagttttatcagag
ataagcgaaaaaagattaaaatctataagggacttttctgattttggtagcggatataaa
attgctatgaaagatttggagcttagaggtgcaggaaatctcttaggagaaagtcagagt
ggtcatgtagaagcggttggttatgatctttatgtaaaatacttgcaggaagcagttgaa
aaagcttcgggtaaagaagtagatgtaaagaaaaaatcagatgtttatatagatataaaa
gttaatgcatatataccaagcacatatatttctgaccagtctcaaaaaatagaaatgtac
actagaatagcaaatattgaaaatatcgaagattacaatatactagtagaagatttaatt
gatatatatggtgatatacctttaatggtggataatattatgtatgtatcattaataaaa
tcattagcagagggcttaggatttaaggaaattcgagagcaaaatgcttatatcaatttg
agattttctaatagagaagagtttaccttcgatgagttaaaagaaattagtgaatcttat
aagggtgatatgaagttggacttatccaaaaatccagcttttaaaatcccagcaactaat
acaaaattaatagatacttatgatttactagaaataataagtagtataaggagtaaaaaa
tga
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