Azoarcus olearius DQS-4: dqs_1109
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Entry
dqs_1109 CDS
T04423
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aoa
Azoarcus olearius DQS-4
Pathway
aoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dqs_1109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoa03019
]
dqs_1109
Enzymes [BR:
aoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
dqs_1109
Messenger RNA biogenesis [BR:
aoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
dqs_1109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Fe-ADH
Utp25_C
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANQ84173
LinkDB
All DBs
Position
complement(1165546..1167030)
Genome browser
AA seq
494 aa
AA seq
DB search
MSFADLGLIPELQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLL
HRLARHANTSTSPARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQ
IQELRRGIEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLP
ASRQSLLFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAH
LLRHQPDTQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRV
LVATDVAARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEEKHLLA
DIQKLIKLEIPQEVVPGFEPDPDFFEAGSRAHRGRRPVEDFDERPRREPRGGREERPPRE
ERAPREDRGARNVVAKRPPRSTIAPDGFDFSKPYVAKPVALAEGAAPDASPAEAGTPRRG
QRPIAFLLGGLGRK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgccgacctcggcctcatccccgaactgcaacgcgcagtagccgacgccggc
tacaccgagccgacgccgatccagcgccaggccatccccatcgtcatcgccggcaacgac
gtcatgggcggcgcccagaccggcaccggcaagaccgccggcttcacgcttccgctgctg
catcgcctggcacgccacgccaacaccagcacctcgccggcacgccaccagacgcgcgcg
ctcatcctcgcgccgacgcgcgaactggcgatgcaggtgtacgaatcagttaagacgtac
agcaaacacctgccgctgcgcgccacctgcatctatggcggggtggatatgaacccgcag
atccaggaactgcgccgcggcatcgaaatcgtcatcgccacccccggccgactgctggac
cacgtgcagcagaagacgatcaacctcacccaggtcgagatgctggtgctggacgaggcc
gaccgcatgctcgacatgggcttcatccccgacatcaagcgcatcctcgcgctgctgccg
gccagccgccagagcctgctgttctccgccaccttctcggacgagatcaagaagctcgcc
gaccagatgctgaagaacccgcagctgatcgaagtcgcgcggcgcaacatggtgtcggag
acgatcacccaccgcgtgcacccggtgtcgtcgggcatgaagcgcaacctgctcgcccat
ctgctgcgccaccagcccgacacgcaggcgctggtcttcgtcgacaccaagctggtatgc
ggccggctggcccacttcctcgaacgccacagcatctcggccgactcgatccacggtgac
aagagccagcagcagcgcaccgaaacgctggaagctttcaaggcgggcaagctgcgcgtg
ctggtcgccaccgacgtcgccgcacgcggcatcgacatcgacgagctgccctacgtcatc
aactacgagctgccgcacaccgcggaagactacgtgcaccgcatcggccgcaccggccgc
gccggccaccagggcaacgcggtgtcgctggtatgcaccgaagaaaagcacctgctggcc
gacatccagaagctgatcaagctggagattccgcaggaagtggtgcccggcttcgagccc
gaccccgatttcttcgaagccggcagccgcgcccacaggggccgccgcccggtcgaggat
ttcgacgaacgcccccggcgcgagccgcgcggcggccgcgaagaacgcccgccgcgcgaa
gagcgcgccccgcgcgaggatcgcggcgcccgcaacgtcgtggccaagcgcccgccgcgg
tccacgatcgccccggacggtttcgatttcagcaaaccctacgtcgccaagcccgtggcg
ctggccgaaggcgccgcccccgacgccagccccgccgaagccggcacgccgcgtcgcggc
caacggccgatcgccttcctgctgggcggtctcgggcggaaatag
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