Azoarcus olearius DQS-4: dqs_1738
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Entry
dqs_1738 CDS
T04423
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aoa
Azoarcus olearius DQS-4
Pathway
aoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dqs_1738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoa03019
]
dqs_1738
03009 Ribosome biogenesis [BR:
aoa03009
]
dqs_1738
Enzymes [BR:
aoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
dqs_1738
Messenger RNA biogenesis [BR:
aoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
dqs_1738
Ribosome biogenesis [BR:
aoa03009
]
Prokaryotic type
rRNA processing factors
dqs_1738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ANQ84780
LinkDB
All DBs
Position
complement(1859178..1862192)
Genome browser
AA seq
1004 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GAERHGFLPFKEISRSYFQPGVDAGKASIKEALREGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERAELRDVMDQLEVPGGMSLIARTAAIGRSAEELQ
WDLNYLLQLWTAIEGAATSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQAR
QFMAHVMPGNVNRVKRYQDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSI
DVNSGRATKGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVENR
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALH
IVRILEEEAMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPQ
HEIIRLRHDQLNLEDIALASYQMVQKPADEEMRLPTKNGDKPARQEAAVKGISPEQPAPI
VEARAEAAPAPAAVAPAPRRGLLDWILGLFRSEPAPAATPAPAETPAKREARPRGERNGD
ARRGNGNRNRREGQRERTERDGETPRARPENGRHARGERSESVEREKPQQERAERPERAD
RPERTERGEGGRGRGRGQRQARTEELNEKPADKAAEVAAEVIAAAALASANDTEAVVPSG
DDSAGENAAPEKRRRRGRGRRDRRPAEVAGVDGVTENEGSADAVAETADVLAPEAAPVVA
EAEAVVQVAATVEAVEAPAVEAPAVEDAPAAAEAAPASAELPVVASAATAVESIVEAAPL
PVAIETAVPTEEVAGAQVTETVAPETVPPLCVAEPPAADHPEVSVEAEAVATTFETATVQ
PVAAPEAEPVAEAPIPVVVAEDSIVPPAPTETRAAGVEQKPAPSDPIDLGPALADSGLVL
IETSRDKLSKFGTGAVEQSVPLGRKPRQAMVIAEEPLQQVETRK
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcgacgcaggccgaggaactgcgcgtcgcaatcgtagac
ggtcagaaactgatcgatctcgatatcgaatcggccgccaaggaacaacgcaagagcaac
atctacaaagcggtcatcacccgcatcgagcccagcctcgaagccgctttcgtcgattac
ggcgccgagcgccacggcttcctgccgttcaaggaaatctcgcgctcctacttccagccg
ggcgtggatgccggcaaggccagcatcaaggaagccctgcgcgaaggccaggaactgatc
gtccaggtggaaaaggacgagcgcggcaacaagggcgcggcgctcaccacctacatctcg
ctggccgggcgctacctggtcctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cgtgtggaaggcgacgagcgcgccgaactgcgcgacgtcatggaccagctcgaagtcccg
ggcggcatgagcctgatcgcgcgtaccgcggcgatcggccgcagtgccgaagagttgcag
tgggacctgaactacctgctgcagctgtggaccgcgatcgaaggcgccgccaccagccag
tccggcgcgttcctgatctaccaggaaggcagcctggtgatccgcgcgatccgcgattac
ttccagccggaaatcggcgaaatcctgatcgacaccgacgacatctacgagcaggcgcgc
cagttcatggcccacgtcatgccgggcaacgtcaaccgggtcaagcgctatcaggacgac
gtgccgctgttctcgcgcttccagatcgagcaccagatcgaatccgcctactcgcgtcag
gtcggcctgccctccggcggcgcggtggtcatcgaccacaccgaagcgctggtgtcgatc
gacgtgaactcgggccgtgcgaccaagggcgccgacatcgaggaaaccgccttccgcacc
aacctggaagcggccgatgaaatcgcccgccagctgcgcctgcgcgacctcggcggcctg
atcgtcatcgacttcatcgacatggagtcgcagaagaaccaacgcgaagtcgagaaccgc
ctgcgcgacgcgctgcgccacgaccgcgcccgcgtgcagaccggcaagatcagccgcttc
ggcctgctcgaactgtcgcgccagcgcctgcgtccggcgctcgccgaaaccagctacatc
ccctgcccgcgctgtaacggcaccggccacatccgcagcaccgaatcgtcggcgctgcac
atcgtgcgcatcctcgaagaggaagcgatgaaggagaacaccggcgcggtgcacctgcag
gtgccggtcgatgtcgccaccttcctgctcaacgagaagcgggtcgacatcgcccgcatc
gagatgcgccacaaggtgcagctcatcatcgtgccgaaccgccacctggagacgccgcag
cacgaaatcatccgtctgcgccacgaccagctcaacctcgaagacatcgccctcgccagc
taccagatggtgcagaagccggctgacgaggaaatgcgcctgccgaccaagaacggcgac
aagccggcccgccaggaagctgcagtcaagggcatctcgcccgaacagcccgcgcccatc
gtggaagcccgcgccgaagccgcgccggcgcccgccgcggtggcgcccgcgccgcgccgc
ggcctgctcgactggattctcggcctgttccgcagcgaaccagccccggccgccacgccg
gcgccggccgaaacgccggccaagcgcgaggcccgtccgcgcggcgaacgtaacggagac
gcccgtcgcggcaatggcaatcgcaaccgccgtgaaggccagcgcgagcgcaccgaacgc
gatggcgagacgcctcgcgcacgccccgagaacggccgtcacgcacgtggcgaacgaagc
gaaagcgtcgaacgcgagaagccccaacaggagcgtgcggagcgtcccgagcgcgctgac
cgtcccgaacggaccgagcgcggcgaaggcggccgtggtcgcggccgtgggcagcgccag
gcacgcaccgaagagctgaacgagaagcctgccgacaaggctgccgaagtcgcggcggaa
gtcatcgccgccgcggcgctcgccagcgcgaacgacaccgaagccgtggtgccctcgggc
gacgacagtgcaggtgagaacgcagcccccgaaaagcgtcgccgccggggccgcggccgc
cgcgaccgccgcccggccgaagtcgccggcgtggatggcgtgaccgagaacgaaggcagc
gccgatgcggttgccgaaaccgccgacgtcctcgcccctgaggccgcgcccgtcgtggcg
gaggccgaggctgtggttcaggtcgccgcgaccgtggaagcggtcgaagcccctgcggtc
gaagcccctgcggtggaagatgcgccggctgccgccgaggcggcccccgcgagcgcagaa
ctgccggtcgtcgcctccgccgctacggcggtggagtcgatcgtcgaggcggcaccgctg
ccggtcgccatcgaaacggcggttcccaccgaggaggtcgctggcgcccaggtcaccgaa
accgttgcgcccgagacggttccgccgctgtgcgtggccgaacccccggccgccgaccac
cccgaggtgtccgtggaagccgaggcggtggcgacgacgttcgaaaccgcgacggtgcag
ccggtggccgcccctgaggcagaaccggtcgccgaggcgccgatcccggtggtcgtggcg
gaagacagcatcgtcccgcctgcgccgaccgagacgcgcgccgccggcgttgagcagaag
cccgcgccttcggatccgatcgacctgggaccggcgctggctgacagcggcttggtactg
atcgaaacgagccgcgacaagctgtccaagtttggcaccggtgccgtggaacagtccgtg
ccgctgggccgcaagccccgtcaggcgatggtaattgcggaagaaccgctgcagcaggtt
gagacgcgcaagtaa
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