Azoarcus olearius DQS-4: dqs_2235
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Entry
dqs_2235 CDS
T04423
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aoa
Azoarcus olearius DQS-4
Pathway
aoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dqs_2235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoa03019
]
dqs_2235
03016 Transfer RNA biogenesis [BR:
aoa03016
]
dqs_2235
Enzymes [BR:
aoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
dqs_2235
Messenger RNA biogenesis [BR:
aoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
dqs_2235
Transfer RNA biogenesis [BR:
aoa03016
]
Prokaryotic type
tRNA degradation factors
dqs_2235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_SLS1_2
OB_RRP5_4th
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Rv1363c_MT1408
Motif
Other DBs
NCBI-ProteinID:
ANQ85266
UniProt:
A1K7B5
LinkDB
All DBs
Position
complement(2382196..2384295)
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AA seq
699 aa
AA seq
DB search
MPTAIKKTFTYGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLT
VDYVEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSL
NPEVDADIPAMIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVA
GTASAVLMVESEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAAND
ALVARVKELALADVEEAFRITSKQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFT
LEAGTVRSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTG
RDEQIIDAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGE
DFSYTIRVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLT
DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKD
ALGVARGEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSITISS
VSAEGAQKAKARIEDITAEVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQIANERV
NNVGDYVKEGQAVRVKVLETDERGKIRLSMKALLNENAG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
ttgcctaccgctatcaagaaaaccttcacctacggcgcccacactgtcacgctggaaacc
ggtgaggttgcccgccaggccggcggcgccgtcatcgtcaatgtcgatgacaccgttgtc
ctcgcgaccgtcgtcgccgccaaggatgccaagccgggtcaggacttcttcccgctcacc
gtcgactacgtcgagaagttctacgccgcgggccgcatccccggcggcttcttcaagcgc
gaaggtcgcccgaccgagaaggaaacgctgacgtcgcgcctgatcgaccgtccgatccgt
ccgctgtttccggaaggcttctacaacgaagtccaggtgatcgtcaccgttttgtcgctc
aacccggaagtcgatgccgacatcccggcgatgatcgccgcttcggctgcgctgtcgatc
tcgggcatcccgttcgacggcccgatcggtgccgcccgcgtgggctacgcggatggccag
tatctgctgaacccgaccgtcgagcagttgaagaccagcaagctcaacctggtggtggcg
ggtaccgcgagcgcggtgctgatggtcgaatccgaggccgacgaactgtccgagcaggtc
atgctgggcgccgtggtgttcggccacgagcagatgcaggctgcgatcaacgcgatcaac
gaattggtcgaagtcgccggcaagcccgagtggaactggcagccgccggccgccaacgat
gcgctggtcgcgcgcgtcaaggaactggcgctggcggatgtggaagaagccttccgcatc
accagcaagcaggcccgtaccgagcgtctgtccgaaatccgcaagcgcaccatcgcggcg
ctgaccgatggcgttgacaatgcgccgtccgagaacgagatcaaggacatcttcttcacg
ctggaagccggtacggtgcgcagccgcatccttaacggcgagccgcgcatcgacggccgc
gacacccgcaccgtgcgcccgatcgacatccgcgtcggcgtgctgccgcgtacccatggc
tcggcgctgttcacgcgtggggaaacccaggcactggttgttgccacgctgggcaccggc
cgtgacgaacagatcatcgatgccatcgccggggagtacaaggagcgtttcatgctccac
tacaacttcccgccgttctccacgggcgaaaccggtcgtttcggtgtgaccaagcgccgc
gagatcggtcatggccgcctcgccaagcgcgcactggtggcgatgctgccgaagggcgag
gatttcagctacaccatccgcgtggtgtcggaaattaccgagtcgaacggctccagctcg
atggcgtcggtgtgcggcggctcgcttgcgctgatggacgccggcgtgccgatgaaggac
cacgtggccggtatcgccatgggtctgatcaaggacggcaaccgcttcgcggtgctgacc
gacatcctgggtgacgaggaccacctcggcgacatggacttcaaggtggccggtaccgaa
aacggtgtcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatcatg
caggtcgcgctggcgcaggccggcgaaggccgtctgcacatcctcaagcagatgaaggat
gcgctcggcgtcgctcgcggcgaggtgtccgagtttgccccgcgcatgctcaacatgaag
atcaatccggaaaagatccgcgatgtgatcggcaagggcggtgcggtgattcgcgcgctg
caggaagaaaccggtaccgtcatcgagatcgaggacgacggcagcatcacgatctcgtcc
gtttctgcagaaggcgcgcagaaggccaaggcccgcatcgaggacatcaccgcggaagtc
gaggtgggcaaggtctacgaaggcaccgtggtgcgtctgctcgactttggcgccatcgtg
aacatccttccgggtcgtgacggcctgctgcacgtctcccagatcgccaacgaacgcgtc
aataacgtcggcgactacgtcaaggaaggccaggcggtgcgcgtgaaggtgctcgagact
gatgagcgcggcaagatccgcctcagcatgaaggcgctgttgaacgaaaacgcgggctga
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