Acholeplasma oculi: Aocu_05350
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Entry
Aocu_05350 CDS
T03695
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aoc
Acholeplasma oculi
Brite
KEGG Orthology (KO) [BR:
aoc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Aocu_05350 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoc03021
]
Aocu_05350 (rpoD)
Transcription machinery [BR:
aoc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Aocu_05350 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_10
HTH_28
HTH_Tnp_ISL3
KORA
Motif
Other DBs
NCBI-ProteinID:
CDR30608
UniProt:
A0A061A9R2
LinkDB
All DBs
Position
1:606421..607683
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AA seq
420 aa
AA seq
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MIDKKIIDQLVKKAGKKKTLNQSDVEKYFEYGTDDYFDVEKELATFEIDVLLDEEPEDEV
DNTKDDAFLDDDDLEVEVDPDEPDEFSLSSLEVEDIKEEELLNIETIVSSVKVDDPVRMY
LKEIGQIPLLNIDDERKYAIWVYEGRVALEQLEAVKNGEMTLDQDDIDTLENTVRKAHIA
KEKLVEANYRLVVSIAKKYTQRGLLFLDLIQEGNMGLMRAVDKFDYEKGFKFSTYATWWI
RQAITRAVADQARTIRIPVHMVETINKMIRIQRQLVQELGREATVEEVAEKMGIAPEKVQ
NIQRIAKEPISLEAPVGEEEDSSLGDFISDPNALNPHDYMMQEMVKKTLDEVLETLTDRE
EKVLRLRYGLLDGKTHTLEEVGREFGVTRERIRQIEAKALRKLRSPQRQNKLKEFYVARK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgatagataaaaaaataattgaccagttggttaaaaaagctggtaaaaagaaaacattg
aaccaatccgatgttgaaaaatactttgagtatggtacggatgattactttgatgtagaa
aaagaattagctacatttgaaatcgatgtcttattagatgaagaaccagaagatgaagta
gataatacaaaagatgatgcattcttagacgatgatgatttagaagttgaagttgaccct
gatgaaccggatgagttttctttatcaagcttagaagttgaagatattaaagaagaagaa
ttactcaatattgaaacgattgtatcttctgttaaggttgatgaccctgtacgtatgtat
ttaaaagaaattggacaaattccacttttaaatattgacgatgaaagaaaatatgccatt
tgggtatatgagggtcgtgttgcattagaacagttagaagctgtcaagaatggtgaaatg
acactggatcaagatgatattgatacacttgaaaatacagtaagaaaggcgcatattgct
aaagaaaaacttgttgaagcaaactaccgtttagtcgtatcgattgctaaaaagtatacg
caaagaggtttattattcctagacttaattcaagaaggaaatatgggcttaatgcgtgcg
gttgataaatttgattatgaaaaaggatttaaattctcaacctatgcgacttggtggatt
cgtcaagcaatcaccagagcagttgccgatcaagcaagaacaatacgtatccctgtccat
atggttgaaaccattaataaaatgattcgtattcaacgtcaacttgttcaagaacttgga
agagaagcaacagttgaagaagtcgctgaaaaaatgggtattgcaccagaaaaggttcaa
aatattcaacgtatagcaaaagaacctatttctttagaagcacctgtgggtgaggaagaa
gattcttcattaggagattttattagtgatccgaatgcattaaacccacatgattatatg
atgcaagaaatggttaaaaagactttagatgaagttttagaaacattaacggaccgtgaa
gaaaaagtacttagattacgttatggtttactcgatggtaaaacacatacattagaagaa
gtaggacgtgaatttggagtaactcgtgaaagaattcgtcaaattgaggcgaaggcgtta
agaaaacttagaagtcctcaacgtcaaaataaactcaaagagttttatgttgcaagaaaa
tga
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