Acholeplasma oculi: Aocu_05560
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Entry
Aocu_05560 CDS
T03695
Name
(GenBank) DEAD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aoc
Acholeplasma oculi
Pathway
aoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aocu_05560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoc03019
]
Aocu_05560
03009 Ribosome biogenesis [BR:
aoc03009
]
Aocu_05560
Enzymes [BR:
aoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aocu_05560
Messenger RNA biogenesis [BR:
aoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aocu_05560
Ribosome biogenesis [BR:
aoc03009
]
Prokaryotic type
rRNA helicases
Aocu_05560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
CDR30629
UniProt:
A0A061AB50
LinkDB
All DBs
Position
1:624044..625663
Genome browser
AA seq
539 aa
AA seq
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MAILFNDLPILETTKEALKQLGFEEATPIQELAIPKMISGLDLIGQAQTGTGKTFAFAIP
MVEKIDADLKAIQGLILTPTRELTMQVYKEIIKLVKFYPNLRVTTIVGGESYDKQFRELA
RKPHIIVATPGRIIDHIDRKTIDLSQVSILTLDEADEMLKMGFQEDLERILQTIPSTRQT
VLFSATMPPFIRKIANNYQKNPELLKVEAETLTVDKIIQGYYLVKESDKANLLMRILDSE
NPKTAIIFANTKADVDRIAETLQQNHFTADALHGDLKQSQRNYVMSRFRSKQLSLLIATD
VAARGLDVSDVEIVINYDLPQQDEIYVHRIGRTGRAGKKGKAFTLVTPRKRKMIEILAKF
TKAEIKHLEVPNDEGIYKQRLKSFKHDLKIALRKEYPNHLELIEDLITEEITKEQLINYL
LNQVMPEKKTYEAIEIVKTKSSEDRSNNKDFRRGKTQVRSSNGTYVDFKLNLGKKDGLTP
PVLFKFMEKEYGIFSKNIGDIKHHANETVFGLKKETINRLKTNKKVSYQGKDVSIKEIN
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttatttaacgatttaccaattttagaaacaaccaaagaagccttaaaacaa
ttaggttttgaagaggcgactccaattcaagaattagcaattcctaagatgattagcgga
ttagatttaatcggacaagcacaaacaggaacaggaaaaacttttgcatttgcaatacca
atggtagaaaaaatcgatgcagatttaaaagcaatccaaggactgatattaacacctact
agagaattaacgatgcaagtttataaagaaattattaaacttgttaaattctaccctaac
ttacgtgtaacaacaattgttggtggagaatcttatgacaaacaatttagagaacttgca
agaaaaccgcatatcattgtagcaactccaggtagaatcattgatcatattgatagaaaa
acaattgatttgagtcaagtatctattttaacattagatgaagctgatgaaatgttaaag
atgggtttccaagaagatttagaacgtattttacaaacaattccaagcacaagacaaacg
gttttattctcagcaacaatgccacctttcattagaaagattgcaaacaactatcaaaag
aatccagaattacttaaagtagaggctgaaacattaactgtagataaaatcattcaagga
tattatttagttaaagaaagcgataaagccaatttattaatgagaattttagattctgaa
aatccaaagactgcaattatatttgcaaatacaaaagcggatgtggacagaatcgctgaa
accttacaacaaaatcactttactgcagatgcgttacatggagatttaaaacaatcacaa
agaaactatgtgatgagtcgttttagaagtaaacaattaagtctattaatcgcaacggac
gttgctgctagaggacttgacgtatccgatgttgaaattgttattaactatgacttacca
caacaagatgaaatatatgttcaccgtattggtagaacaggtagagcaggtaaaaagggt
aaagcatttacactggttacacctagaaaacgtaagatgattgaaatattagctaaattt
acaaaagctgaaatcaaacatttagaagtaccaaatgacgaaggcatttataagcaaaga
ttaaaatcatttaaacatgatttaaagattgctttaagaaaagaatatccaaatcattta
gaattaattgaggatttaattactgaagaaattactaaagaacaattaatcaattatctt
ctaaaccaagtgatgcctgagaagaagacttacgaagctatagaaattgtaaaaacaaaa
tcttcagaagatcgctcaaataataaagattttagaagaggtaaaacacaagttagatca
tctaacggaacttacgttgactttaaactgaacttaggtaagaaagatggattaacacct
ccagtcttatttaaattcatggaaaaagaatacggaatcttctctaaaaatattggagat
attaagcatcacgcaaatgaaacagtatttggacttaagaaagaaacgattaaccgctta
aaaacaaacaaaaaagtttcttatcaaggtaaagacgtatccattaaagaaattaattga
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