Acholeplasma oculi: Aocu_06560
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Entry
Aocu_06560 CDS
T03695
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box containing
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aoc
Acholeplasma oculi
Pathway
aoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aocu_06560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoc03019
]
Aocu_06560
Enzymes [BR:
aoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aocu_06560
Messenger RNA biogenesis [BR:
aoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aocu_06560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
GPR128_GAIN_subdomA
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDR30729
UniProt:
A0A061ABF9
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All DBs
Position
1:723287..724642
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AA seq
451 aa
AA seq
DB search
MTFNELNIIDRIQKSLILAGYSEPTPIQVEAIPLLLEKKDILGSAQTGTGKTAAFAIPIL
QNIYADKNHKEDRLIKALVLTPTRELATQISENFTIYAKYLNIKNTTIYGGVSQKRQEEA
IKRGVDILVATPGRLQDLMNQDIIELKHVEYLVLDEADQMLDMGFIKDVLKIVSKVPKNR
QTMLFSATMPKSIEALAKEILVEPTRIAVTPVTQTLDVIEQSVYHVAKKQKTNLLLHLIR
EKEMKSVLVFTRTKHNANKLVKELITANCVAEPIHGSKSQSAREKALLNFKSGKTKILVA
TDIAARGIDIDSLDSVINYDLPQLGETYIHRIGRTGRAGLSGRAISFCDPAEKPILYDIE
KHIKAKIKEVSHDFVLVQESSATKLEIKNTVDKTPKKKSVTKHSKLPDHLKFKDYKKSKD
KNQKDNKKKENKTFVEYQKKKNPFYQTKNNK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatgaactaaatattattgaccgtattcaaaaatcacttatactcgctggt
tatagtgaaccaacacccatacaagttgaggctattcctttactgctggaaaagaaagac
atactaggaagtgcacaaacagggacaggaaagacagctgcttttgctattcctatttta
caaaatatatatgcagataaaaatcataaggaagatagactaattaaagcattagtgcta
actccaactagagaactggctacacaaatttcagagaattttaccatatatgcgaaatac
ttaaatattaaaaatactactatttatggtggtgtttctcaaaaaagacaagaagaagct
ataaaaagaggtgtagatatattagtagctacaccaggcagattgcaagatttaatgaat
caagatattatagaattaaagcatgtagaatatctagtcttagatgaggcagatcaaatg
cttgatatgggattcattaaagatgtgttaaaaattgtttctaaagtaccaaaaaataga
caaactatgttgttttcagctacaatgccaaaatcaattgaggctttagctaaagaaatt
ttagttgagccaactagaattgctgttacacctgttacacaaaccctggatgttattgag
caaagtgtctatcatgtcgcaaagaaacaaaaaacgaatttgttattacatttaattcgt
gaaaaagaaatgaaatcagttttagtatttactcgaacaaaacacaatgccaataaatta
gttaaagaacttataacagcaaattgtgtagctgaacctattcacggaagtaaatcacaa
tcagcaagagaaaaagcacttctaaacttcaaatctggaaaaactaagattttagtagca
accgatattgctgcaagaggtatagacattgatagtttagactctgttataaactatgac
ttacctcaattaggtgagacctatattcatagaattggaagaaccggacgtgcaggttta
agtggacgtgcgataagtttttgtgatcctgctgaaaagccaattttatatgacatagaa
aagcacatcaaagcaaaaattaaagaagttagtcatgattttgtcttagttcaagaatca
agtgctacaaaacttgaaataaaaaatactgtagataagacacctaagaaaaaatcggtt
acgaaacattccaaattgccggatcatttaaaatttaaagactataaaaaatcaaaagat
aagaatcaaaaagataataaaaagaaagaaaataaaacgtttgttgagtatcaaaagaag
aaaaatcctttttaccaaacaaaaaacaataagtaa
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