Amphiprion ocellaris (clown anemonefish): 111562856
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Entry
111562856 CDS
T06018
Name
(RefSeq) collagen alpha-1(XV) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
aoce00535
]
111562856
Proteoglycans [BR:
aoce00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
111562856
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
111562856
NCBI-ProteinID:
XP_023117396
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Position
Unknown
AA seq
1367 aa
AA seq
DB search
MMGALHLSLALCFILSPPVRCQWWSLLWANPRTTSSPPSTATSVTSITSSGPTDSLQTGT
EWMGEDRVTEEAVEGTEGSVLAPTTPGSGVSVPGYSTVEPDIIPPEDNTGGGSKSRSQYK
PLKHWKSERGSGSHLDLTELIGVPLPPSVSFTPGYEGFPAYNFGPEANIGRLTKTFVPGS
FYRDFAIIATVRPANQRGGVLFAITDARQKVVELGLALTPVRGGLQSILLYYTDKEQASH
SHKAAAFSVPDMTDQWARFTVVVEHDEVRLYMDCGEAERTTFHRRPEKLSFSHNSGIFVA
NAGSTGLDKFVGSIQQLVIKDDPRAAEEQCEDDDPYASGYASGDDALDDRETEEDTMKIT
QGRKQGEDSVPVRAPPTEVPEVELEEYSGRVTPTVANEELLVRLPQRTEEPGERSRDAHV
KPGLKGERGDPGPPGPPGPPGPTFAPGEAQLGPFGPQGPPGTPGSPGQPGRDGQKGSKGE
KGDPGQRGSQGFPGLNGEVGVKGEKGDPGVGSPGPPGLPGPPGPPRSRSVPYGPDALLED
LDSDTVLIRGPPGPPGPPGPPGLPGPHMSSSDTPESLSPGYDGPSGMPGRNGPPGVLGLP
GPAGRDGTPGPPGAVGEKGDQGLPGPPGPKGECGSVGGEGTPGPQGPIGPPGKRGPAGRP
GPPGPPGPPGTKFFAEDMEGSGKSDMLIGAGVRGPQGPPGPQGLQGEDGAPGAPGLSVKG
EAGDPGPRGLQGPAGLPGARGAKGEKGSPGPQGDRGADGLSIPGPPGPPGPPGPGVNLQD
LLNVTEGIFNFTEIRGPPGLMGPEGLPGRAGFPGPRGPKGDLGLPGVQGPSGIKGEKGEP
GVTIAADGSILSAPRGPQGSKGLKGDRGFTGPAGLMGPIGPTGQKGEYGFPGRPGRPGMP
GKKGDRGDAVGLPGPPGPPGPPGPSGRILGLNGTVFPVRPRPHCKKGRESMTRGDSFGPK
GDKGDEGLPGEPGTPAPRFPDGIVGARGDQGYKGQKGEQGDSGLPGPPGLPGRSGLVGPK
GESIVGPPGPVGSPGEPGAAGFGRPGPRGPPGPPGPPGPPPPYGSVVSVPGPPGPPGLPG
SPGYSNPVTTYKTISALNREAHRAAEGTLAYVSEKGGELYIRARNGWRKIQLGELIHQGP
SSSEASQALSRPGDWGRPHRIHSQELQEGSRGYQPSYNVLPQTFNAVPGLHLVALNAPLK
GDMRGIRGADFQCYQQARSMGLTATYRAFLSSHLQDLATIVRKADRNDMPVVNLRGEVLF
SSWMSIFSGNGGIFDPSTPIYSFDGRNVMTDSAWPEKLVWHGSSTVGIRLTTNYCEAWRT
ADMAVTGQAALLQTGRLLGQHVRSCSNHYIVLCIENTYVGNSHQRRN
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagcccttcacctctctcttgcgctctgctttatcctctcacctcccgtacga
tgccagtggtggagtttgctgtgggcgaaccctagaaccacctcttctcctccctccact
gctacttctgtcacctccatcacatcctcaggccctactgactccctgcagacagggaca
gagtggatgggagaggacagggtgacggaggaagctgtggagggcacagaagggtctgtg
ctggctcctactacaccaggctcaggagtgtcagtccctggctacagtactgtagaacct
gacatcatacctccagaggacaatacaggtggaggcagcaaaagcaggtcccagtacaaa
ccactgaaacactggaagagtgagcgaggctcaggaagtcatctcgacctgacagagtta
attggcgtacccctgcctccttcagtctccttcactcctggctatgagggttttccagcc
tacaacttcgggcctgaagccaacatcggccgactcaccaaaacctttgtgccagggtca
ttctaccgcgactttgctatcattgccacggtgcgtccagctaaccagagaggtggtgtg
ctcttcgccatcacagatgcccgtcagaaggtggtggagctgggtttggccctcactcca
gttcgtggaggactccagagcatcttattgtactacactgacaaagagcaggcctcccac
agccacaaagctgcagcctttagtgtgccagatatgactgaccagtgggcacgatttaca
gtggtggtggagcatgacgaggtgcgtctctacatggactgtggagaggctgaacggacg
acgttccatcggaggccagaaaagctcagcttctcacacaactcaggcatctttgtagcc
aatgcaggaagcacggggctggacaagtttgtgggttctattcagcagctggtcataaaa
gatgaccccagagcagccgaggagcagtgtgaagacgacgatccttatgcctctggttac
gccagtggagatgatgctctggatgacagagagacagaagaagacaccatgaagatcaca
caggggagaaaacagggggaggacagtgttcccgttagagctccacccactgaggttcca
gaggtggagcttgaggaatattctggtcgcgtgactccaacggtcgccaatgaagaactg
ctagtcagattgccacagcggactgaagagccaggagagcgatccagagatgctcatgtc
aagccggggttaaaaggagaacgtggcgatcccggaccacctggcccacccggtccccca
ggccctacctttgcacctggggaggctcagctcggaccatttgggccacagggaccacca
ggaacccctggatctcctggacaaccagggagagatggacagaagggaagcaagggtgaa
aagggagatccaggtcagagaggatctcaaggattcccaggtttgaatggagaagttgga
gttaaaggagaaaagggagacccaggagttggttcaccaggacctcctggcctccctgga
cctcctggaccccccagatcacgcagtgtaccttatggaccagatgccctattggaggac
ctggacagtgatactgtactcattaggggtcctcctggtccaccagggcctccaggacct
cctggtctccctggaccccacatgtcatcatctgacaccccagaaagcctctctccaggg
tatgatggaccgtctggtatgccaggcagaaacggacccccaggagtacttgggctacca
ggtccagcaggaagagatgggactcctggtccacctggagctgtgggagagaagggtgac
caagggctacctgggccacctggaccaaagggtgaatgtgggtctgtgggtggagaagga
actccagggcctcaaggtcctattggtccaccaggaaagagaggcccagcaggtcgtcca
ggaccccctggcccacctggacctccaggaaccaaattctttgcagaggatatggaggga
tctggaaagagcgacatgctgatcggagctggtgtcagaggcccacagggtccacctggg
cctcagggactacagggtgaggatggagctccaggagcaccaggcctctctgtcaagggt
gaagcaggtgacccaggaccacggggtcttcagggtcctgctggactaccgggtgctcgg
ggggccaaaggagaaaaaggcagtccaggacctcagggtgatcgaggcgctgatggactc
agcatcccaggaccacctgggcctcctggacctcctgggcctggtgttaatctacaggat
ctgctcaacgttacagaaggtatcttcaactttacagagatcagaggaccaccagggctg
atgggccctgaaggtttgcctggcagagctggatttccaggccccagaggacctaaagga
gacctaggactcccaggtgtccaggggccatcagggattaagggagaaaaaggagaacca
ggagtgacgattgctgctgacggctctatcttatctgcaccaagaggccctcagggatct
aaaggactgaagggagatcgtggcttcacaggacctgctggactcatgggcccaattgga
cctactggacaaaaaggagaatatggtttccctgggcgcccagggcgacctggtatgcct
gggaagaaaggtgacagaggagatgctgttggcttaccgggacctcctggtcctcctggt
ccacctggaccctcaggaagaattctgggtctgaatggaacagtgttcccggtgcgcccc
agaccgcactgcaaaaagggacgagagtcaatgaccaggggagattcattcgggcctaaa
ggagacaagggagatgagggattacctggtgagccggggacaccagcgcccaggtttcca
gatggaattgtgggtgctcggggtgatcagggatacaaagggcagaagggagaacagggt
gactcaggcctgcctggtcctccaggacttccagggaggtcaggacttgtgggtcctaaa
ggtgagtccatcgtcggacctccaggtcctgttggttctcctggtgagcctggagctgct
ggttttggacgacctggaccccgaggccctcccggccctcctgggcccccaggacctcca
cctccatatgggtcagtggtcagtgtccccggcccccctggtcctcctggtctgccaggt
tcaccaggatattccaacccggtgaccacctataagacgatcagcgctctcaacagagag
gctcaccgagctgctgagggaaccttagcgtatgtttctgagaaaggaggagagctgtac
atcagagcacgcaacggctggcgcaagatccagctcggagagttgatccatcaaggacct
tcttcttcagaggcatctcaggctctcagcagacctggagattggggtcgaccacacagg
atccacagccaggagctgcaggagggcagtagaggttatcagcccagctacaacgtgctg
ccacagacgttcaacgctgtacctgggctccacctggtagcgctgaacgccccactaaaa
ggcgacatgcgtggcatccgtggggcagacttccagtgctaccagcaggcccgatccatg
gggctcacagccacctacagggccttcctgtcctcacacctccaggatctggcaaccatt
gtgaggaaggcggaccgcaatgacatgcctgtggttaatctgaggggtgaagtgttgttc
agtagctggatgtccatcttctctgggaatggaggcatctttgacccatctacacccatc
tactccttcgacggacgcaacgtgatgactgactcagcgtggccagagaagctggtgtgg
cacggctccagcaccgtgggcatccgtctgaccactaactactgcgaggcatggaggacg
gccgacatggcggtgacgggccaggccgccctcctgcagacgggccggctgctgggtcaa
cacgtgcgctcctgctccaaccactacatcgtgctgtgcatagagaacacatacgtgggg
aactcgcatcaaaggaggaactga
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