Amphiprion ocellaris (clown anemonefish): 111563004
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Entry
111563004 CDS
T06018
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111563004 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aoce04131
]
111563004 (rabgef1)
Membrane trafficking [BR:
aoce04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
111563004 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
111563004 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
CID_GANP
PIN_8
Motif
Other DBs
NCBI-GeneID:
111563004
NCBI-ProteinID:
XP_023117634
Ensembl:
ENSAOCG00000008580
LinkDB
All DBs
Position
14:2988018..3004674
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AA seq
512 aa
AA seq
DB search
MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAYASTHGQQTQSHSQASTPPQQPGHTSLGPFSKFEEKKTNEKTRKVTTVKKFF
SPSSRTASKKETQEGKTPSPSISRHASFETDQVSKDFVEFLKNLQKTGREIHKQCRAFIV
NMSSKKDLSADELSECVQDFYQGMADRLMSHFKGSSESVEQVMDQVEKYIMTRLYKSVFC
PETTDDEKKDLATQNRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDVIEMDSKRVPR
DKLACITRCSKHIFSAIRITKNEPASADDFLPALIYIVLKANPPRIQSNIQYITRFCNPS
RLMTGEDGYYFTNLCCAVTFIEKLDAQSLNLSPEEFERYMSGQASPRYSSSEGDWPSSGS
GPAAATNPVLVQLNHNLELLSDLSGRQETLMEAAQSLQADLLSWPETVQREIHDILDKYP
LEILPCTVSAIDANNMDNENLPPPLTPQVFAG
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggacggagcggcgggggatccacgtggaccaatcggatctgctgtgcaaa
aagggatgtggttactatggcaacgcggcatggcagggcctgtgctccaagtgctggagg
gaggagtaccagcgggtacggcagaagcagatccaggacgactgggccctggcagaaaag
ctgcagagagaggaggaggcagcttatgccagcacccacggacagcagacccagtcccac
tctcaggcctcgacgcctccacagcagccaggacacacctcactgggacccttctccaag
tttgaggagaagaagaccaacgagaagacgaggaaagtgaccaccgtgaagaagttcttc
agtccgtcgtcacgcactgcttccaagaaagaaacccaggagggcaagacgcccagcccg
tccatcagccgccacgccagcttcgagacagaccaggtctctaaggactttgtggagttc
ttgaaaaacctgcagaagaccggcagggagatccacaagcagtgccgagcttttattgtg
aacatgtcgagcaagaaggacctgagtgccgatgagctgtcggagtgcgttcaggatttc
taccagggcatggccgaccgcctgatgagccactttaaaggctcctcagagagcgtggag
caggtgatggaccaggtggagaagtacatcatgacccgtctgtataagagcgttttctgt
ccagaaaccaccgacgacgagaagaaggacttggccacgcagaacaggataagggctcta
cactgggtgaccatccagatgctctgtgtttccatggatgaagaaatccctgaagtctct
gagaatgttgtcaaagcaataacagacgtcattgagatggactccaagagggttcctcgg
gacaaacttgcgtgcatcactcgctgcagcaaacacatcttcagtgcgatcaggatcacc
aagaacgagccggcctccgctgacgacttcctgcctgcactcatttacatcgtgctcaag
gcgaaccctccgaggattcagtccaacatccagtacatcactagattctgtaacccgagc
cggctgatgaccggagaggatggatactacttcaccaacctgtgctgtgcggtgaccttc
atcgagaagctggacgctcagtctctcaatctttccccggaggagtttgagcgctacatg
tcgggccaagcttcgcctcgttacagcagctctgagggcgactggcccagctccgggtca
ggaccggcggccgccaccaacccggtcctggttcagctcaaccacaacctggagctgctg
tcggacctcagcggccggcaggaaacgctgatggaggcggctcagagcctccaggccgac
ctgctctcctggcctgagacggtgcagcgggagattcacgacatcctggataagtatcct
ctggagatcctgccctgcaccgtgtctgctatcgacgccaacaacatggacaacgagaac
ctgccgccgcccctcacgccccaggtgttcgctgggtag
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