KEGG   Amphiprion ocellaris (clown anemonefish): 111563481
Entry
111563481         CDS       T06018                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aoce03041]
    111563481 (smu1a)
Spliceosome [BR:aoce03041]
 Complex B
  Other components
   Complex B specific factors
    111563481 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 WD40_Gbeta Beta-prop_EML Beta-prop_WDR90_POC16_2nd LisH_TPL NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_BBS7 Beta-prop_IP5PC_F VPS8_N DUF7165 Beta-prop_NOL10_N PROPPIN LisH zf_topless LisH_PAC1
Other DBs
NCBI-GeneID: 111563481
NCBI-ProteinID: XP_023118326
Ensembl: ENSAOCG00000017920
LinkDB
Position
13:complement(5322667..5331044)
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLHRTLVTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFCKDSSQLLSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTPD
GHHIVSASSDGTVKVWNVKTTECSSTFKPLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctctggaggtggaatccgcagacgtgatccgtctgattatgcagtacttaaaagag
aacaatctgcaccggactctcgtcacgctgcaggaggagaccactgtgtctctgaacacc
gtggacagtatcgagagcttcgtggcagacatcaacagtggccactgggatactgtcctg
caagccatccagtccctcaagctgccagataagactttaatagacctttatgagcaggtt
gtgttggagctgattgagttgagagagcttggagcagctcgttccctcctcagacagacc
gaccccatgattatgctgaaacagacgcagccagagagatacatccacttggagaacctg
ctggctcgctcttacttcgatcccagagaggcatacccagacggcagtagtaaggagaag
cgtcgggcagctattgctcaggctctggctggagaggtcagcgtggtgccgccctctcgt
ctcatggctctgctgggacagtctctgaagtggcagcagcatcagggtctccttcctcct
ggtatgaccatcgatttgttcagaggtaaagctgccgtcaaagatgtggaggaggagcgc
ttccccacgcagctcagtagacacatcaagtttggacagaaatctcatgtggagtgttcc
cgattctcccctgatggtcagtatctggtcaccggctccgtagacggcttcattgaagtc
tggaacttcaccactggcaaaatcagaaaggatctgaagtaccaggctcaggataacttc
atgatgatggatgatgccgtgttgtgtatgtgcttcagtcgggacacagagatgttggcc
accggagcccaggatggaaagatcaaggtctggaagatccagagcggtcagtgtctgagg
aggtttgaacgagcccacagcaaaggagttacatgtctcagtttctgtaaagacagcagc
cagctcctcagtgcctccttcgatcagaccatcagaatccacggactgaagtcaggtaaa
actctaaaggagttccgcggtcactcttcgtttgtcaacgaggccactttcaccccagac
gggcatcacattgtcagcgcctcctccgacggtacagtaaaggtgtggaacgtgaagacc
acagagtgcagcagcacctttaaacctctgggaacatcagccggcaccgacatcacagtc
aacaacgtcatcctgctgcccaagaaccccgagcactttgtagtgtgtaatcgctccaac
actgtggtcatcatgaacatgcagggacagatcgtgaggagtttcagctctggtaagagg
gaaggcggtgactttgtgtgctgcactctgtcgccccgcggtgagtggatctattgcgtg
ggagaagactttgtgctctactgcttcagcacagtcaccggcaagctggagagaacgctg
acggtacacgagaaggacgtgatcggcatcgcccaccacccccaccagaacctcatctcc
acctacagcgaggatggcctgctgaagctctggaagccttaa

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