Amphiprion ocellaris (clown anemonefish): 111563836
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Entry
111563836 CDS
T06018
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111563836 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoce03032
]
111563836 (topbp1)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111563836 (topbp1)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
111563836 (topbp1)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
111563836 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
111563836
NCBI-ProteinID:
XP_023118865
Ensembl:
ENSAOCG00000005530
LinkDB
All DBs
Position
22:complement(20289404..20305814)
Genome browser
AA seq
1520 aa
AA seq
DB search
MSKGDKEGFIVKFVESKGLKTEYAVKAYEAILELQSEKYLKRIEEDEVLRMDQKDKSLFV
FSSFTTPAFLHCKKLGCRMVSPLVVLYCLQHQHCVPKAEKPVYNMAMADITISCTSLDKA
TRAEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLGKPILLPTWVKACWEKS
QDSLFRYTDLPLEDYLCPVLRGCTVCVTGLSSTERKEVQRLCEQHGGSYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYTVERNASKTTRPHTSTPT
GTGHKEDGPSLLGLSHISVNASMTINDTAVTNGTISRLETPDPIDSLDLTVCPADDVLDG
CKLYLCGLPGKKLEKLRRLVNAAGGLRFNQPSEELTHVVMGDLDQGLKNFLSKATHRPHV
VTVQWLLDSFSKGSLLPETGYLHPDCLPPALPAVSVPAHHTPSSRLSAGPPVASPSTPRQ
KRAEEDLLSQYMDDDPTVVDMPPAAAESSSRKSFSTAAEPQPEPWGPNHTRGPEPNSTLQ
EASEAGLFFGKCFLFVGFGTEAEAQLSVLVTEHGGRVLIGRTRVVADYAVVPLLGCSVEA
TVDEVVTDTWLAMCVEKECILQLSSNPLFTPVAVMDGRFPLKDCILSVSQFTGAERESLV
ELAKHLGANVQDYFVRLANQKKGMLASTHLVLHSPEGTKYQAAKKWRLPAVTMYWILEAA
RTGQRAAEERFLVDLPPSPERDEESFVGGSQKPVMPPPACSSPEIPLLGVQSGKAITPLD
LGRFQSKVFRSVLDEMKPKEDIRTPKQNQDGGRRNPLQKDSSLQLDTPSRFLSRDQLFRP
SFNVKDALGALETPGGRSKPGEKVETPLTDVINRNLKVALANSARNASEMQEVSASPQLT
KTTEKEVPEKEAGPLAGVVICVGKKLSKMQGELNAIAASLGADFRWVCDDTVTHYIYQGR
VGDNTREYRGVKERGLHVVSQYWLQACAEEQRHVPESLYPFTYNPKMSLNLSQLPSNSQR
SPPLTRTQVKDVTEAKADKSEHNATVEAAAPRRVSDGSIDRDEMNDTTEKSDISETLQMR
ENLQRQLQEIMSATKLTTGRRTSVRLSRMGSGGADSSPNTPDGSRVGRSNNRRTLEALRV
TREAAMDINTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPFAPPPPPSAENG
PQFRDSMTDSELVEMAACDVIDQHMGQRVLTPPSEEPENDFPTPKAPSIAFPLANPPVAP
EPQEERKEEKQIPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPLRN
EKYLAAMAAGKWILHRSYLEACRSVGRFIQEDEYEWGSSSILDALPSITSQQKRLALAAM
RWRKALQRRSEHEGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSSYKETTHLF
ADFSRLKPGDFRVDVSEATSQGVTCLKPEYIADYLMQEPTPPIELYHLAAEAPSEEAPGT
PSRKRKAAADTSRLKKSRLH
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggagacaaggaaggttttattgtgaagtttgttgaaagtaaagggctgaaa
acagagtatgctgtcaaagcttatgaggccattttggagctacagtctgaaaagtacttg
aaaagaattgaagaagatgaggttttacgaatggaccagaaggacaagtctctgtttgtg
ttcagcagcttcaccactccagcctttctgcactgcaagaagcttggctgcaggatggtg
agtccgctggtggtgttgtactgtctgcagcaccaacactgtgtccccaaagcagagaaa
cctgtctataacatggccatggcagacatcactatttcctgcacgagcctggacaaagct
acaagggcagaggtgatggatctggtgcaactcatgggtggacgagtctatcttgatcta
aatgtgtctgtgacacacctgattgcaggtgaagtgggcagcaaaaaatacctggtagct
gcaagcctgggtaaacccatcctgctgcccacttgggtgaaagcctgttgggagaaatca
caggatagtcttttcaggtatacagacctgccgttggaggactatctgtgccctgtgcta
cgtggctgtactgtttgtgtaacaggcctttccagcacagagcgcaaagaagtacagcgg
ctctgtgagcagcacggaggcagctacactggtcagctcaaaatgaatgagtgcacacac
ctcattgttagtgaaccaacaggtcaaaagtacgagtgcgctcggaagtggaatgtgtat
tgtgtgtctctgcactggctctttgacagcatagagaaaggcttttgtcaagatgagagc
aggtacactgtagagcgcaatgcgtcaaaaaccactcgaccacacacttctaccccaacg
ggtaccggccacaaagaggatggtccatctcttttgggcttgagccacatttctgtcaat
gctagcatgacaataaacgacacagccgtcaccaatggcaccatcagtcgtctggaaact
ccagatcccatagacagtctggatctcaccgtgtgcccagctgatgatgtactggacggt
tgtaagctgtatctatgtggcctgccagggaagaaactggagaagctgcgccgtctagtg
aatgctgcaggaggtttgcgcttcaaccagcccagtgaggaactcacacatgtagtcatg
ggtgatctcgaccagggtctcaagaattttctctccaaagcgactcataggccccacgta
gtaacggtgcagtggctgctggacagtttctccaaaggcagtttgctcccagaaacaggt
tacctccaccccgactgtctgcctcctgctctacctgctgtatctgttccagcccatcat
actcccagctcccggctctcagctggtccgcctgtagccagccccagcactccccggcaa
aagagagcagaagaagatctgctctcacaatacatggatgacgacccaacagtggttgat
atgccaccagcagcagcagagagcagcagcaggaagtccttcagtacagctgcagagcct
cagccggagccctgggggccaaatcacaccagaggaccagagccaaactcaaccctgcag
gaagccagcgaggcaggactgtttttcgggaaatgtttcctttttgtgggctttggcacc
gaggccgaggcgcagctctctgtgctggtgacagaacatggaggcagggtgctgataggc
cgtacacgggttgtggctgactatgcagtggtgccgctgttgggctgttcagtggaggcc
acagtggacgaggtggtcactgatacctggctggccatgtgtgtggagaaggagtgtatt
ctgcaactgtcctccaaccctttattcaccccagttgctgtaatggatggacgttttcct
ctgaaagattgcattctctcagtcagtcagttcaccggagcagagagggagtctttggtg
gagctggccaagcaccttggagccaatgtccaggattactttgtgcgcctggccaaccag
aagaaaggcatgctggccagcactcatctggtgctgcacagtcctgagggcacaaagtac
caagcagccaagaagtggagacttcctgccgttaccatgtactggatactagaagcagct
cgaaccggccagagggcagcggaggagagatttctagttgacttgccaccctcaccagag
agagatgaagagagttttgtcggcggttcccagaaaccagtcatgcctccaccagcttgt
tcctctccagagatccccctgctgggtgtccagagtggtaaagccatcaccccgctggat
ttaggtcgatttcagagcaaagtgttccgctctgtgttggacgagatgaagcccaaagag
gacatccgcacccctaaacaaaaccaggatggcggaagaaggaacccgcttcagaaggac
tcatccctgcagctggacacgccgtcacgtttcctcagcagagaccagctcttcaggccc
tccttcaatgtcaaggatgcactgggagctttggaaactccaggcgggagatcgaaacca
ggagagaaagtggagacgccactaactgatgtcatcaacaggaacctgaaggtggcttta
gccaacagcgctcgcaatgcctcagaaatgcaagaagtttctgctagtccacagcttaca
aagacaactgagaaggaggttccagaaaaagaagctggtcccctggctggtgttgtgatc
tgtgttggaaagaaactgagcaaaatgcagggcgagctgaatgccatcgctgcttctctt
ggagctgacttcaggtgggtttgtgatgatacagtgacacactacatctaccagggtcgt
gtgggggacaacacccgggaataccgaggagtgaaggagagagggctgcatgtggtctct
cagtactggctgcaggcttgtgctgaggagcagagacacgtcccagagtctctgtatccc
ttcacctacaaccccaagatgagcctgaacctgagccaactccccagcaactctcagagg
tctccacctttaacacgaacacaagtcaaggacgtcactgaagcaaaggctgataagtct
gaacataatgccacggtagaagctgcagcccctcgacgtgtaagtgacggaagcatagat
cgagatgaaatgaatgatactacagaaaaaagcgatatttcagagactctacaaatgagg
gagaacctccaacggcagctgcaggagatcatgtcagccaccaaactgacgacagggagg
cgaacatcagtcagactctcccggatgggatcaggaggggccgactcgagccccaacaca
cctgacggcagcagagtcggacgcagcaataacagacgaactctagaagctctgagggtg
accagagaagcagctatggacataaacacggagccatctcagagtgaacagatagtttgg
gacgatcctacagccagagaggagagggccaagctggcagataatctacagtggcctgga
agtccctcacaacactcagaacccttcgcacctccacctcctcccagcgcagagaacgga
ccacagttcagggactcaatgactgactcagagctggtcgagatggctgcttgcgacgtc
attgaccaacacatgggccagagggtcttgacgcctccatcagaggagccagaaaatgat
tttcccactcctaaagctcctagcatcgcctttcctcttgctaaccccccagtagcaccg
gagccacaagaggagagaaaggaagagaagcagatacccagatttcagctgtcctccctc
agccctcaggagcgcattgattacagtcacctcatagaggagcttggtggtgtagtcttg
gacaagcagtctttcgaccccagctgctcacacatcatcgtagggacgcctctgcgtaac
gagaaatatctagcagcaatggcagctggtaaatggatcctgcaccgatcgtacctggag
gcctgtcgctcagttggacgcttcattcaggaggatgagtatgagtggggcagcagctcc
atcctggatgcgttaccctccatcacatctcaacagaagagactggcgttagctgccatg
cgttggagaaaagccctgcagaggcgctctgagcatgagggagccttcagtggatggaca
gtcatgctgaacattgaccagagcagagagtcaggcttcagacggttactgcagtctggc
ggggcgaaggtcctgcccagtccctccccatcctcatacaaggagaccacacatctgttt
gcagacttcagccggctaaaacctggagacttcagagtcgacgtatcagaggccacctcg
cagggagtcacatgcttgaagccagagtacatcgcagactacctaatgcaggagccaact
ccacctattgagctgtaccacttggctgctgaagctccatctgaggaagctcctgggact
ccgtcacgtaagcgtaaagcggcagcagacacgtccaggctgaaaaagagccgtctgcac
tga
DBGET
integrated database retrieval system
